揭示肺腺癌及癌旁非肿瘤组织中的微生物动态:通过纳米孔测序技术揭示尼古丁暴露和不同临床阶段的作用。
Unveiling microbial dynamics in lung adenocarcinoma and adjacent nontumor tissues: insights from nicotine exposure and diverse clinical stages via nanopore sequencing technology.
机构信息
Department of Respiratory, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
Gene Hospital of Henan Province, Precision Medicine Center, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
出版信息
Front Cell Infect Microbiol. 2024 Aug 27;14:1397989. doi: 10.3389/fcimb.2024.1397989. eCollection 2024.
BACKGROUND
Lung is the largest mucosal area of the human body and directly connected to the external environment, facing microbial exposure and environmental stimuli. Therefore, studying the internal microorganisms of the lung is crucial for a deeper understanding of the relationship between microorganisms and the occurrence and progression of lung cancer.
METHODS
Tumor and adjacent nontumor tissues were collected from 38 lung adenocarcinoma patients and used nanopore sequencing technology to sequence the 16s full-length sequence of bacteria, and combining bioinformatics methods to identify and quantitatively analyze microorganisms in tissues, as well as to enrich the metabolic pathways of microorganisms.
RESULTS
the microbial composition in lung adenocarcinoma tissues is highly similar to that in adjacent tissues, but the alpha diversity is significantly lower than that in adjacent tissues. The difference analysis results show that the bacterial communities of , , and were significantly enriched in cancer tissues. The results of metabolic pathway analysis indicate that pathways related to cellular communication, transcription, and protein synthesis were significantly enriched in cancer tissue. In addition, clinical staging analysis of nicotine exposure and lung cancer found that , , were significantly enriched in the nicotine exposure group, while the microbiota of and were significantly enriched in stage II tumors. The microbiota significantly enriched in IA-II stages were , , and , respectively.
CONCLUSION
Nanopore sequencing technology was performed on the full length 16s sequence, which preliminarily depicted the microbial changes and enrichment of microbial metabolic pathways in tumor and adjacent nontumor tissues. The relationship between nicotine exposure, tumor progression, and microorganisms was explored, providing a theoretical basis for the treatment of lung cancer through microbial targets.
背景
肺是人体最大的黏膜面积,直接与外界环境相通,面临着微生物暴露和环境刺激。因此,研究肺部的内部分泌物微生物对于深入了解微生物与肺癌的发生和进展之间的关系至关重要。
方法
收集了 38 名肺腺癌患者的肿瘤和相邻非肿瘤组织,采用纳米孔测序技术对细菌的 16s 全长序列进行测序,并结合生物信息学方法对组织中的微生物进行鉴定和定量分析,以及对微生物的代谢途径进行富集。
结果
肺腺癌组织中的微生物组成与相邻组织高度相似,但 alpha 多样性明显低于相邻组织。差异分析结果表明, 、 、 和 中的细菌群落明显在癌组织中富集。代谢途径分析结果表明,细胞通讯、转录和蛋白质合成相关的途径在癌组织中明显富集。此外,对尼古丁暴露和肺癌的临床分期分析发现, 、 、 明显在尼古丁暴露组中富集,而 、 和 的微生物群在 II 期肿瘤中明显富集。IA-II 期明显富集的微生物分别为 、 、 和 。
结论
采用纳米孔测序技术对全长 16s 序列进行测序,初步描绘了肿瘤和相邻非肿瘤组织中微生物的变化和微生物代谢途径的富集。探索了尼古丁暴露、肿瘤进展与微生物之间的关系,为通过微生物靶点治疗肺癌提供了理论依据。