理解过渡态期间的能量波动:AbrB 在地衣芽孢杆菌中的作用。
Understanding energy fluctuation during the transition state: The role of AbrB in Bacillus licheniformis.
机构信息
State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, 368 Youyi Avenue, Wuchang District, Wuhan, Hubei, 430062, PR China.
出版信息
Microb Cell Fact. 2024 Nov 4;23(1):296. doi: 10.1186/s12934-024-02572-1.
BACKGROUND
Limited research has been conducted on energy fluctuation during the transition state, despite the critical role of energy supply in microbial physiological metabolism.
RESULTS
This study aimed to investigate the regulatory function of transition state transcription factor AbrB on energy metabolism in Bacillus licheniformis WX-02. Firstly, the deletion of abrB was found to prolong the cell generation time, significantly reducing the intercellular ATP concentration and NADH/NAD ratio at the early stage. Subsequently, various target genes and transcription factors regulated by AbrB were identified through in vitro verification assays. Specifically, AbrB was shown to modulate energy metabolism by directly regulating the expression of genes pyk and pgk in substrate-level phosphorylation, as well as genes narK and narGHIJ associated with nitrate respiration. In terms of oxidative phosphorylation, AbrB not only directly regulated ATP generation genes, including cyd, atpB, hmp, ndh, qoxA and sdhC, but also influenced the expression of NAD-dependent enzymes and intracellular NADH/NAD ratio. Additionally, AbrB positively affected the expression of transcription factors CcpN, Fnr, Rex, and ResD involved in energy supply, while negatively affected the regulator CcpA. Overall, this study found that AbrB positively regulates both substrate-level phosphorylation and oxidative phosphorylation, while negatively regulating nitrate respiration.
CONCLUSIONS
This study proposes a comprehensive regulatory network of AbrB on energy metabolism in Bacillus, expanding the understanding of regulatory mechanisms of AbrB and elucidating energy fluctuations during the transition state.
背景
尽管能量供应在微生物生理代谢中起着关键作用,但在过渡状态下能量波动的研究还很有限。
结果
本研究旨在探讨过渡状态转录因子 AbrB 对地衣芽孢杆菌 WX-02 能量代谢的调控作用。首先,发现缺失 abrB 会延长细胞的世代时间,显著降低早期细胞间的 ATP 浓度和 NADH/NAD 比。随后,通过体外验证实验鉴定了 AbrB 调控的各种靶基因和转录因子。具体而言,AbrB 通过直接调节基质水平磷酸化的基因 pyk 和 pgk 以及与硝酸盐呼吸相关的基因 narK 和 narGHIJ 的表达来调节能量代谢。在氧化磷酸化方面,AbrB 不仅直接调节 ATP 生成基因,包括 cyd、atpB、hmp、ndh、qoxA 和 sdhC,还影响 NAD 依赖性酶和细胞内 NADH/NAD 比的表达。此外,AbrB 正向影响参与能量供应的转录因子 CcpN、Fnr、Rex 和 ResD 的表达,而负向影响调节因子 CcpA。总的来说,本研究发现 AbrB 正向调节基质水平磷酸化和氧化磷酸化,同时负向调节硝酸盐呼吸。
结论
本研究提出了 AbrB 对芽孢杆菌能量代谢的全面调控网络,扩展了对 AbrB 调控机制的理解,并阐明了过渡状态下的能量波动。