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SRSF4相关的环状RNA circFOXP1通过与宿主基因形成R环来调节缺氧诱导的肺动脉平滑肌细胞增殖。

SRSF4-Associated ca-circFOXP1 Regulates Hypoxia-Induced PASMC Proliferation by the Formation of R Loop With Host Gene.

作者信息

Song Xinyue, Xu Ya, Li Mengnan, Guan Xiaoyu, Liu Huiyu, Zhang Jingya, Sun Hanliang, Ma Cui, Zhang Lixin, Zhao Xijuan, Zheng Xiaodong, Zhu Daling

机构信息

College of Pharmacy (X.S., Y.X., M.L., X.G., H.L., H.S., C.M., L.Z., X. Zhao, D.Z.), Harbin Medical University, P.R. China.

Central Laboratory of Harbin Medical University (Daqing), P.R. China (X.S., Y.X., M.L., X.G., H.L., J.Z., H.S., D.Z.).

出版信息

Arterioscler Thromb Vasc Biol. 2025 Apr;45(4):e118-e135. doi: 10.1161/ATVBAHA.124.322026. Epub 2025 Feb 20.

Abstract

BACKGROUND

Pulmonary hypertension (PH) is a rare and fatal disease, the pathological changes of which include pulmonary arterial smooth muscle cell (PASMC) proliferation, which is the pathological basis of pulmonary vascular remodeling. Studies have demonstrated that chromatin-associated circRNA can regulate a variety of biological processes. However, the role of chromatin-associated circRNA in the proliferation of PH remains largely unexplored. In this study, we aimed to identify the function and mechanism of chromatin-associated circRNA in PASMC proliferation in PH.

METHODS

The role of chromatin-associated circFOXP1 (ca-circFOXP1) was investigated in hypoxic mouse PASMCs and SuHX (Sugen5416+hypoxia) model mice through the use of antisense oligonucleotide knockdown and adeno-associated virus-mediated knockdown. Through bioinformatic sequence alignment, chromatin isolation by RNA purification, Cell Counting Kit 8, 5-ethynyl-2-deoxyuridine, Western blot, and other experiments, the function and mechanism of ca-circFOXP1 were verified.

RESULTS

The expression of ca-circFOXP1 was found to be significantly increased in SuHX model mice and hypoxic mouse PASMCs. Moreover, ca-circFOXP1 was found to regulate the level of the host protein FOXP1 (forkhead box protein 1) through the R loop, thereby influencing the phosphorylation activity of SMAD2 (SMAD family member 2) and, consequently, the proliferation of mouse PASMCs. It is noteworthy that the m6A modification was found to promote the formation of the R loop between ca-circFOXP1 and the host gene , thereby regulating the expression of the host protein. Furthermore, we have identified that the splicing factor SRSF4 (serine/arginine rich splicing factor 4) can upregulate the expression of ca-circFOXP1 by splicing exons 6 and 9 of FOXP1 pre-mRNA.

CONCLUSIONS

The results demonstrated that the splicing factor SRSF4 upregulated the expression of ca-circFOXP1, and m6A methylation promoted R-loop formation between ca-circFOXP1 and host genes, regulated the level of host protein FOXP1, and then affected the phosphorylation activity of SMAD2, mediating PASMC proliferation, leading to pulmonary vascular remodeling. These results provide a theoretical basis for further study of the pathological mechanisms of hypoxic PH and may provide certain insights.

摘要

背景

肺动脉高压(PH)是一种罕见的致命疾病,其病理变化包括肺动脉平滑肌细胞(PASMC)增殖,这是肺血管重塑的病理基础。研究表明,与染色质相关的环状RNA可调节多种生物学过程。然而,与染色质相关的环状RNA在PH增殖中的作用在很大程度上仍未被探索。在本研究中,我们旨在确定与染色质相关的环状RNA在PH中PASMC增殖中的功能和机制。

方法

通过使用反义寡核苷酸敲低和腺相关病毒介导的敲低,在缺氧小鼠PASMC和SuHX(Sugen5416+缺氧)模型小鼠中研究了与染色质相关的circFOXP1(ca-circFOXP1)的作用。通过生物信息学序列比对、RNA纯化染色质分离、细胞计数试剂盒8、5-乙炔基-2'-脱氧尿苷、蛋白质免疫印迹等实验,验证了ca-circFOXP1的功能和机制。

结果

发现ca-circFOXP1在SuHX模型小鼠和缺氧小鼠PASMC中的表达显著增加。此外,发现ca-circFOXP1通过R环调节宿主蛋白FOXP1(叉头框蛋白1)的水平,从而影响SMAD2(SMAD家族成员2)的磷酸化活性,进而影响小鼠PASMC的增殖。值得注意的是,发现m6A修饰促进了ca-circFOXP1与宿主基因之间R环的形成,从而调节宿主蛋白的表达。此外,我们确定剪接因子SRSF4(富含丝氨酸/精氨酸的剪接因子4)可通过剪接FOXP1前体mRNA的外显子6和9上调ca-circFOXP1的表达。

结论

结果表明,剪接因子SRSF4上调了ca-circFOXP1的表达,m6A甲基化促进了ca-circFOXP1与宿主基因之间R环的形成,调节了宿主蛋白FOXP1的水平,进而影响了SMAD2的磷酸化活性,介导了PASMC增殖,导致肺血管重塑。这些结果为进一步研究缺氧性PH的病理机制提供了理论基础,并可能提供一定的见解。

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