Yuan C, Li J, Selby T L, Byeon I J, Tsai M D
Department of Chemistry, The Ohio State University, Columbus, OH 43210, USA.
J Mol Biol. 1999 Nov 19;294(1):201-11. doi: 10.1006/jmbi.1999.3231.
The INK4 (inhibitor of cyclin-dependent kinase 4) family consists of four tumor-suppressor proteins: p15(INK4B), p16(INK4A), p18(INK4C), and p19(INK4D). While their sequences and structures are highly homologous, they show appreciable differences in conformational flexibility, stability, and aggregation tendency. Here, p16 and p18 were first compared directly by NMR for line broadening and disappearance, then investigated by three different approaches in search of the causes of these differences. From denaturation experiments it was found that both proteins are marginally stable with low denaturation stability (1.94 and 2.98 kcal/mol, respectively). Heteronuclear (1)H-(15)N nuclear Overhauser enhancement measurements revealed very limited conformational flexibility on the pico- to nanosecond time-scale for both p16 and p18. H/(2)H exchange of amide protons monitored by NMR on three proteins (p16, p18 as well as p15), however, revealed markedly different rates in the order p18<p16</=p15. A subset of very slowly exchanging residues (about 19 in total) was identified in p18, including 16 residues in the region of the fourth ankyrin repeat, probably as a result of a stabilizing effect by the extra ankyrin repeat. Thus, while INK4 proteins may have similar low thermodynamic stability as well as limited flexibility on the pico- to nanosecond time-scale, they display pronounced differences in the conformational flexibility on the time-scale of minutes to hours. Further analyses suggested that differences in H/(2)H exchange rates reflect differences in the kinetic stability of the INK4 proteins, which in turn is related to differences in the aggregation tendency.
INK4(细胞周期蛋白依赖性激酶4抑制剂)家族由四种肿瘤抑制蛋白组成:p15(INK4B)、p16(INK4A)、p18(INK4C)和p19(INK4D)。尽管它们的序列和结构高度同源,但在构象灵活性、稳定性和聚集倾向方面存在明显差异。在这里,首先通过核磁共振(NMR)直接比较p16和p18的谱线展宽和消失情况,然后通过三种不同方法研究这些差异的原因。变性实验发现,这两种蛋白质的稳定性都较低,变性稳定性分别为1.94千卡/摩尔和2.98千卡/摩尔。异核(1)H-(15)N核Overhauser增强测量表明,在皮秒到纳秒时间尺度上,p16和p18的构象灵活性都非常有限。然而,通过核磁共振监测三种蛋白质(p16、p18以及p15)酰胺质子的H/(2)H交换,发现交换速率明显不同,顺序为p18<p16≤p15。在p18中鉴定出一组交换非常缓慢的残基(总共约19个),包括第四锚蛋白重复区域的16个残基,这可能是由于额外的锚蛋白重复产生的稳定作用。因此,虽然INK4蛋白可能具有相似的低热力学稳定性以及在皮秒到纳秒时间尺度上有限的灵活性,但它们在分钟到小时时间尺度上的构象灵活性存在明显差异。进一步分析表明,H/(2)H交换速率的差异反映了INK4蛋白动力学稳定性的差异,而这又与聚集倾向的差异有关。