Müller-Loennies S, MacKenzie C R, Patenaude S I, Evans S V, Kosma P, Brade H, Brade L, Narang S
Division of Biochemical and Medical Microbiology, Borstel Research Center, Parkallee 22, D-23845 Borstel, Germany,
Glycobiology. 2000 Feb;10(2):121-30. doi: 10.1093/glycob/10.2.121.
Pathogens belonging to the genus Chlamydia contain lipopolysaccharide with a 3-deoxy-D- manno- oct-2-ulosonic acid (Kdo) trisaccharide of the sequence alpha-Kdo-(2-->8)-alpha-Kdo-(2-->4)-alpha-Kdo. This lipopolysaccharide is recognized in a genus-specific pattern by murine monoclonal antibodies (mAbs), S25-23 and S25-2 (both IgG1kappa), which bind as the minimal structures the trisaccharide and the terminal Kdo-disaccharide, respectively. The variable domains of these mAbs were reverse transcribed from mRNA which was isolated from hybridomas and cloned as single-chain variable fragments (scFvs) in E.coli TG1. The kinetics of binding of whole antibodies, Fab fragments and scFvs to natural and synthetically modified ligands were determined by surface plasmon resonance (SPR) using synthetic neoglycoconjugates. As examples of an antibody-carbohydrate interaction involving anionic carboxyl groups on the ligand, we report that the affinities of these antibodies are higher than usually observed in carbo-hydrate-protein interactions (K(D)of 10(-3)to 10(-5)M). SPR analy-ses of monovalent Fab and scFv binding to the natural trisaccharide epitope gave dissociation constants of 770 nM for S25-2 and 350 nM for S25-23, as determined by global fitting (simultaneous fitting of several measurements at different antibody concentrations) of sensorgram data to a one-to-one interaction model. Local fitting (separate fitting of individual sensorgram data at different antibody concentrations) and Scatchard analysis of the data gave kinetic and affinity constants that were in good agreement with those obtained by global fitting. The SPR data also showed that while S25-2 bound well to several Kdo disaccharides and carboxyl-reduced Kdo ligands, S25-23 did not. Identification of amino acids in the complementarity determining regions revealed the presence of a large number of positively charged amino acids which were located towards the center of the combining site, thus suggesting a different recognition mechanism than that observed for neutral ligands. The latter mainly involves aromatic amino acids for hydrophobic stacking inter-actions and hydrogen bonds.
衣原体属的病原体含有脂多糖,其具有序列为α-Kdo-(2→8)-α-Kdo-(2→4)-α-Kdo的3-脱氧-D-甘露-辛-2-酮糖酸(Kdo)三糖。这种脂多糖以属特异性模式被鼠单克隆抗体(mAb)S25-23和S25-2(均为IgG1κ)识别,它们分别以三糖和末端Kdo-二糖作为最小结构进行结合。这些单克隆抗体的可变区从杂交瘤中分离的mRNA反转录而来,并作为单链可变片段(scFv)克隆到大肠杆菌TG1中。使用合成新糖缀合物通过表面等离子体共振(SPR)测定全抗体、Fab片段和scFv与天然和合成修饰配体结合的动力学。作为涉及配体上阴离子羧基的抗体-碳水化合物相互作用的例子,我们报道这些抗体的亲和力高于碳水化合物-蛋白质相互作用中通常观察到的亲和力(K(D)为10(-3)至10(-5)M)。通过将传感图数据整体拟合(同时拟合不同抗体浓度下的几次测量)到一对一相互作用模型,SPR分析单价Fab和scFv与天然三糖表位的结合,得出S25-2的解离常数为770 nM,S25-23的解离常数为350 nM。对数据的局部拟合(在不同抗体浓度下对单个传感图数据进行单独拟合)和Scatchard分析得出的动力学和亲和力常数与通过整体拟合获得的常数高度一致。SPR数据还表明,虽然S25-2与几种Kdo二糖和羧基还原的Kdo配体结合良好,但S25-23则不然。互补决定区中氨基酸的鉴定揭示了大量带正电荷的氨基酸位于结合位点的中心,因此表明其识别机制与中性配体不同。后者主要涉及用于疏水堆积相互作用和氢键的芳香族氨基酸。