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[根瘤菌的群体遗传学]

[The population genetics of nodule bacteria].

作者信息

Provorov N A

机构信息

All-Russia Research Institute for Agricultural Microbiology, Russian Academy of Agricultural Sciences, St. Petersburg, Russia.

出版信息

Zh Obshch Biol. 2000 May-Jun;61(3):229-57.

Abstract

The data are reviewed on the population structure and evolutionary dynamics of the nodule bacteria (rhizobia) which are among the most intensively studied microorganisms. High level of the population polymorphism was demonstrated for the rhizobia populations using the enzyme electrophoresis (MLEE profiles). The average value of Nei's coefficient of heterogeneity (H = 1 - sigma pi2 [n/(n - 1)]) were: 0.590 for rhizobia (Rhizobium, Bradyrhizobium), 0.368 for enterobacteria (Escherichia, Salmonella, Shigella) and 0.452 for pathogenic bacteria (Bordetella, Borrelia, Erysipelothrix, Haemophilus, Helicobacter, Listeria, Mycobacterium, Neisseria, Staphylococcus) populations. In spite of being devoid of the effective systems for the gene conjugative transfer, many rhizobia populations possess an essentially panmictic structure. However, the enterobacteria populations in which the gene transfer may be facilitated due to the conjugative F- and R-factors, usually display the clonal population structure. The legume host plant is proved to be a key factor that determines the high levels of polymorphism and of panmixis as well as high evolutionary rates of the symbiotic bacteria populations. The host may ensure: a) an increase in mutation and gene transfer frequencies; b) stimulation of the competitive (selective) processes in both symbiotic and free-living rhizobia populations. A "cyclic" model of the rhizobia microevolution is presented which allows to assess the inputs the interstrain competition for the saprophytic growth and for the host nodulation into evolution of a plant-associated rhizobia population. The nodulation competitiveness in the rhizobia populations is responsible for the frequency-dependent selection of the rare genotypes which may arise in the soil bacterial communities as a result of the transfer of symbiotic (sym) genes from virulent rhizobia strains to either avirulent rhizobia or to the other (saprophytic, phytopathogenic) bacteria. Therefore, the nodulation competitiveness may ensure: a) panmictic structure of the natural rhizobia populations; b) high taxonomic diversity of rhizobia which was apparently caused by a broad sym gene expansion in the soil bacterial communities. The kin selection models are presented which explain evolution of the "altruistic" (essential for the host plant, but not for the bacteria themselves) symbiotic traits (e.g., the ability for symbiotic nitrogen fixation and for differentiation into non-viable bacteroids) in the rhizobia populations. These models are based on preferential multiplication of the nitrogen-fixing clones either in planta (due to an elevated supply of the nitrogen-fixing nodules with photosynthates) or ex planta (due to a release of the rhizopines from the nitrogen-fixing nodules). Speaking generally, interactions with the host plants provide a range of mechanisms increasing a genetic heterogeneity and an evolutionary potential in the associated rhizobia populations.

摘要

对根瘤菌(根瘤菌属)的种群结构和进化动态数据进行了综述,根瘤菌是研究最深入的微生物之一。利用酶电泳(MLEE图谱)证明根瘤菌种群具有高水平的种群多态性。内氏异质性系数(H = 1 - sigma pi2 [n/(n - 1)])的平均值分别为:根瘤菌(根瘤菌属、慢生根瘤菌属)为0.590,肠杆菌(大肠杆菌、沙门氏菌、志贺氏菌)为0.368,病原菌(博德特氏菌、疏螺旋体、丹毒丝菌、嗜血杆菌、幽门螺杆菌、李斯特菌、分枝杆菌、奈瑟氏菌、葡萄球菌)种群为0.452。尽管缺乏有效的基因接合转移系统,但许多根瘤菌种群具有基本的随机交配结构。然而,由于接合性F因子和R因子可能促进基因转移,肠杆菌种群通常表现出克隆种群结构。豆科寄主植物被证明是决定共生细菌种群高水平多态性、随机交配以及高进化速率的关键因素。寄主可以确保:a)突变和基因转移频率增加;b)刺激共生和自由生活的根瘤菌种群中的竞争(选择)过程。提出了根瘤菌微进化的“循环”模型,该模型可以评估菌株间对腐生生长和寄主结瘤的竞争对与植物相关的根瘤菌种群进化的贡献。根瘤菌种群中的结瘤竞争力负责对稀有基因型的频率依赖性选择,这些稀有基因型可能由于共生(sym)基因从有毒根瘤菌菌株转移到无毒根瘤菌或其他(腐生、植物致病)细菌而在土壤细菌群落中出现。因此,结瘤竞争力可以确保:a)天然根瘤菌种群的随机交配结构;b)根瘤菌的高分类多样性,这显然是由土壤细菌群落中广泛的共生基因扩展引起的。提出了亲缘选择模型,该模型解释了根瘤菌种群中“利他”(对寄主植物至关重要,但对细菌自身并非如此)共生性状(例如共生固氮能力和分化为无活力类菌体的能力)的进化。这些模型基于固氮克隆在植物体内(由于固氮根瘤中光合产物供应增加)或植物体外(由于固氮根瘤中根瘤菌素的释放)的优先增殖。一般来说,与寄主植物的相互作用提供了一系列机制,增加了相关根瘤菌种群的遗传异质性和进化潜力。

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