Wright P A, Wilmouth R C, Clifton I J, Schofield C J
The Oxford Centre for Molecular Sciences and The Dyson Perrins Laboratory, South Parks Road, Oxford OX1 3QY, UK.
Biochem J. 2000 Oct 15;351 Pt 2(Pt 2):335-40.
beta-Lactams inhibit a range of enzymes via acylation of nucleophilic serine residues. Certain gamma-lactam analogues of monocyclic beta-lactams have also been shown to be reversible inhibitors of porcine pancreatic elastase (PPE), forming acyl-enzyme complexes that are stable with respect to hydrolysis. Crystallographic analysis at pH 5 of an acyl-enzyme complex formed with PPE and one of these inhibitors revealed the ester carbonyl located in the oxyanion hole in a similar conformation to that observed in the structure of a complex formed between a heptapeptide (beta-casomorphin-7) and PPE. Only weak electron density was observed for the His-57 side chain in its 'native' conformation. Instead, the His-57 side chain predominantly adopted a conformation rotated approx. 90 degrees from its normal position. PPE-gamma-lactam crystals were subjected to 'pH-jumps' by placing the crystals in a buffer of increased pH prior to freezing for data collection. The results indicate that the conformation of the gamma-lactam-derived acyl-enzyme species in the PPE active site is dependent on pH, a result having implications for the analysis of other serine protease-inhibitor structures at non-catalytic pH values. The results help to define the stereoelectronic relationship between the ester of the acyl-enzyme complex, the side chain of His-57 and the incoming nucleophile during the reversible (de)acylation steps, implying it is closely analogous to the hydrolytic deacylation step during catalytic peptide hydrolysis.
β-内酰胺类通过亲核丝氨酸残基的酰化作用抑制一系列酶。单环β-内酰胺类的某些γ-内酰胺类似物也已被证明是猪胰弹性蛋白酶(PPE)的可逆抑制剂,形成对水解稳定的酰基酶复合物。对由PPE和其中一种抑制剂形成的酰基酶复合物在pH 5下进行晶体学分析,结果显示酯羰基位于氧负离子孔中,其构象与在七肽(β-酪蛋白吗啡-7)和PPE形成的复合物结构中观察到的类似。在其“天然”构象中,仅观察到His-57侧链的弱电子密度。相反,His-57侧链主要采取了一种从其正常位置旋转约90度的构象。在冷冻以进行数据收集之前,通过将PPE-γ-内酰胺晶体置于pH升高的缓冲液中,使其经历“pH跳跃”。结果表明,PPE活性位点中γ-内酰胺衍生的酰基酶物种的构象取决于pH,这一结果对在非催化pH值下分析其他丝氨酸蛋白酶-抑制剂结构具有重要意义。这些结果有助于确定酰基酶复合物的酯、His-57的侧链与可逆(去)酰化步骤中进入的亲核试剂之间的立体电子关系,这意味着它与催化肽水解过程中的水解去酰化步骤密切相似。