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半乳糖醇二水合物[1-O-(α-D-吡喃半乳糖基)-肌醇二水合物]的分子结构和晶体结构

Molecular and crystal structure of galactinol dihydrate [1-O-(alpha-D-galactopyranosyl)-myo-inositol dihydrate].

作者信息

Noguchi K, Okuyama K, Ohno S, Hidano T, Wakiuchi N, Tarui T, Tamaki H, Kishihara S, Fujii S

机构信息

Faculty of Technology, Tokyo University of Agriculture and Technology, Okuyama Laboratory, Koganei, Japan.

出版信息

Carbohydr Res. 2000 Sep 8;328(2):241-8. doi: 10.1016/s0008-6215(00)00087-2.

Abstract

The crystal structure of galactinol dihydrate has been determined by X-ray diffraction. The crystal belongs to the orthorhombic system, space group P2(1)2(1)2, a = 15.898(6), b = 19.357(5), c = 5.104(4) A, and Z = 4. The structure was refined to R = 0.044 for 1818 observed structure amplitudes. The primary hydroxyl group exhibits twofold orientational disorder. The linkage conformation is close to those of alpha-(1 --> 4) linkages in methyl alpha-maltotrioside tetrahydrate and erlose trihydrate. Although there is no interring hydrogen bond in galactinol, an indirect interring hydrogen bond including a water molecule is present. The observed conformation is additionally stabilized by the indirect interring hydrogen bond. The global minimum in the relaxed-residue energy map based on the MM3(92) force-field is close to the observed conformation in the crystal structure. All hydroxyl, ring and water oxygen atoms are involved in a complex three-dimensional hydrogen-bonding network.

摘要

水合肌醇半乳糖苷的晶体结构已通过X射线衍射确定。该晶体属于正交晶系,空间群为P2(1)2(1)2,a = 15.898(6),b = 19.357(5),c = 5.104(4) Å,Z = 4。对于1818个观测到的结构振幅,结构精修至R = 0.044。伯羟基呈现出双重取向无序。连接构象与α-甲基麦芽三糖苷四水合物和松二糖三水合物中的α-(1→4)连接构象相近。尽管水合肌醇半乳糖苷中不存在环间氢键,但存在一个包含水分子的间接环间氢键。观测到的构象通过间接环间氢键进一步稳定。基于MM3(92)力场的松弛残基能量图中的全局最小值接近晶体结构中观测到的构象。所有羟基、环和水氧原子都参与了一个复杂的三维氢键网络。

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