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蛋白质电子晶体学中的低分辨率直接相位测定——突破球状结构限制

Low-resolution direct phase determination in protein electron crystallography - breaking globular constraints.

作者信息

Dorset D L

机构信息

Structural Biology Department, Hauptman-Woodward Medical Research Institute, 73 High Street, Buffalo, New York 14203-1196, USA.

出版信息

Acta Crystallogr A. 2000 Nov;56(Pt 6):529-35. doi: 10.1107/s0108767300009405.

Abstract

Although the assumption of an overall globular scattering entity can be useful for determining crystallographic phases for a protein at low resolution, there is a point where this pseudoatomic model must be abandoned for further phase refinement. Using 6 A resolution electron diffraction data from aquaporin (AQP-CHIP) as an example, phases of the 16 most intense reflections from a previous direct solution (Dorset & Jap (1998). Acta Cryst. D54, 615-621) were modified with a Hadamard error-correcting code to produce potential maps very similar to the ones obtained using phases from the Fourier transform of averaged electron micrographs. The choice of the optimal phase set was made via the cross correlation of experimental with anticipated density histograms using the autocorrelation function of the latter histogram as the desired endpoint.

摘要

尽管将整体球状散射实体作为假设对于低分辨率下确定蛋白质的晶体学相位可能有用,但在进一步的相位精修中,必须放弃这种伪原子模型。以水通道蛋白(AQP-CHIP)的6埃分辨率电子衍射数据为例,对先前直接法求解(多塞特和贾普(1998年)。《晶体学报》D54卷,615 - 621页)得到的16个最强反射的相位,用哈达玛纠错码进行修改,以生成与使用平均电子显微照片的傅里叶变换得到的相位所产生的势图非常相似的势图。通过将实验密度直方图与预期密度直方图进行互相关,并以后者直方图的自相关函数作为期望的终点,来选择最优相位集。

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