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采用质子双共振差谱相关模式对十肽短杆菌酪肽A的单个氨基酸残基进行研究。

Studies of individual amino acid residues of the decapeptide tyrocidine A by proton double-resonance difference spectroscopy in the correlation mode.

作者信息

Gibbons W A, Beyer C F, Dadok J, Sprecher R F, Wyssbrod H R

出版信息

Biochemistry. 1975 Jan 28;14(2):420-9. doi: 10.1021/bi00673a032.

DOI:10.1021/bi00673a032
PMID:1120110
Abstract

The cyclic decapeptide antibiotic tyrocidine A was studied by two relatively new methods, viz., correlation proton magnetic resonance (pmr) spectroscopy and double-resonance difference pmr spectroscopy. The correlation method of spectral accumulation provided pmr spectra of good resolution, and in addition the signal-to-noise ratio achieved per unit time of accumulation was much higher than that achieved by use of the conventional continuous wave (cw) method. Furthermore, when protonated solvents are used, the correlation mode of accumulation has a distinct advantage over pulse and fast Fourier transform (fft) methods currently in use. Double-resonance difference (drd) spectra of individual amino acid residues in tyrocidine A were obtained by the correlation method when the decoupling frequency was maintained at the center frequency of the appropriate C-alpha proton multiplet and at a level of power that totally decoupled vicinal C-alpha and C-beta protons; the resolution of these spectra was good, and the signal-to-noise ratio was high. The distinct patterns and spectral positions of the drd spectra were characteristic of the particular type of amino acid residue and, therefore, could be used as the basis for making assignments. Furthermore, the drd spectra revealed the spectral positions of individual C-alpha and C-beta proton transitions and therefore, upon spectral analysis, could provide the chemical shifts and coupling constants of these protons. Positions of transitions were revealed even though they were hidden by overlap in the corresponding conventional single- or double-resonance spectra.

摘要

采用两种相对较新的方法对环状十肽抗生素短杆菌酪肽A进行了研究,即关联质子磁共振(pmr)光谱法和双共振差分pmr光谱法。光谱累积的关联方法提供了高分辨率的pmr光谱,此外,单位累积时间内获得的信噪比远高于使用传统连续波(cw)方法所获得的信噪比。此外,当使用质子化溶剂时,累积的关联模式相对于目前使用的脉冲和快速傅里叶变换(fft)方法具有明显优势。当去耦频率保持在适当的C-α质子多重峰的中心频率,并处于完全去耦相邻C-α和C-β质子的功率水平时,通过关联方法获得了短杆菌酪肽A中各个氨基酸残基的双共振差分(drd)光谱;这些光谱分辨率良好,信噪比高。drd光谱独特的模式和光谱位置是特定类型氨基酸残基的特征,因此可作为进行归属的基础。此外,drd光谱揭示了各个C-α和C-β质子跃迁的光谱位置,因此,通过光谱分析,可以提供这些质子的化学位移和耦合常数。即使跃迁位置在相应的传统单共振或双共振光谱中因重叠而被隐藏,也能被揭示出来。

相似文献

1
Studies of individual amino acid residues of the decapeptide tyrocidine A by proton double-resonance difference spectroscopy in the correlation mode.采用质子双共振差谱相关模式对十肽短杆菌酪肽A的单个氨基酸残基进行研究。
Biochemistry. 1975 Jan 28;14(2):420-9. doi: 10.1021/bi00673a032.
2
Homonuclear internuclear double resonance spectroscopy as a basis for determination of amino acid conformation.同核核间双共振光谱法作为确定氨基酸构象的基础。
Proc Natl Acad Sci U S A. 1972 May;69(5):1261-5. doi: 10.1073/pnas.69.5.1261.
3
Total assignments, including four aromatic residues, and sequence confirmation of the decapeptide tyrocidine A using difference double resonance. Qualitative nuclear overhauser effect criteria for beta turn and antiparallel beta-pleated sheet conformations.
J Biol Chem. 1979 Jul 25;254(14):6278-87.
4
Determination of individual side-chain conformations, tertiary conformations, and molecular topography of tyrocidine A from scalar coupling constants and chemical shifts.
Biochemistry. 1979 Dec 25;18(26):5855-67. doi: 10.1021/bi00593a016.
5
Nuclear Overhauser effect and cross-relaxation rate determinations of dihedral and transannular interproton distances in the decapeptide tyrocidine A.十肽短杆菌酪肽A中二面角和跨环质子间距离的核Overhauser效应及交叉弛豫率测定
Biophys J. 1980 Nov;32(2):807-36. doi: 10.1016/S0006-3495(80)85018-1.
6
Simplification and spin-spin analysis of the side chain proton magnetic resonance spectrum of the decapeptide gramicidin S using difference scalar decoupling and biosynthesis of specifically deuterated analogs.
J Biol Chem. 1979 Oct 25;254(20):10301-6.
7
Proton nuclear magnetic resonance assignments.质子核磁共振归属
Methods Enzymol. 1989;177:132-49. doi: 10.1016/0076-6879(89)77009-9.
8
Two-dimensional NMR studies of the antimicrobial peptide NP-5.抗菌肽NP-5的二维核磁共振研究
Biochemistry. 1987 Jul 14;26(14):4389-97. doi: 10.1021/bi00388a030.
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Conformation of somatostatin using scalar coupling constants from 270 and 600 MHz simulated proton magnetic resonance spectra.利用270兆赫和600兆赫模拟质子磁共振谱中的标量耦合常数确定生长抑素的构象。
Biophys J. 1983 Mar;41(3):299-304. doi: 10.1016/S0006-3495(83)84442-7.
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Two-dimensional NMR spectroscopy: an application to the study of flexibility of protein molecules.二维核磁共振光谱法:在蛋白质分子柔韧性研究中的应用
Adv Biophys. 1981;14:139-204.

引用本文的文献

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Antibiotics (Basel). 2021 May 18;10(5):597. doi: 10.3390/antibiotics10050597.
2
Nuclear Overhauser effect and cross-relaxation rate determinations of dihedral and transannular interproton distances in the decapeptide tyrocidine A.十肽短杆菌酪肽A中二面角和跨环质子间距离的核Overhauser效应及交叉弛豫率测定
Biophys J. 1980 Nov;32(2):807-36. doi: 10.1016/S0006-3495(80)85018-1.
3
Proton NMR studies of the Zn(II)--bleomycin-A2--poly(dA-dT) ternary complex.
锌(II)-博来霉素A2-聚(dA-dT)三元复合物的质子核磁共振研究。
Proc Natl Acad Sci U S A. 1981 May;78(5):2967-71. doi: 10.1073/pnas.78.5.2967.
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1H Nmr studies at 360 MHz of the methyl groups in native and chemically modified basic pancreatic trypsin inhibitor (BPTI).在360兆赫下对天然和化学修饰的碱性胰蛋白酶抑制剂(BPTI)中的甲基进行的1H核磁共振研究。
Biophys Struct Mech. 1977 Sep 28;3(3-4):303-15. doi: 10.1007/BF00535703.