Chipot C, Pohorille A
Exobiology Branch, NASA-Ames Research Center, Moffett Field, California 94035-1000, USA.
J Phys Chem B. 1998 Jan 1;102(1):281-90. doi: 10.1021/jp970938n.
The conformational equilibria of the acetyl and methyl amide terminally blocked L-alanine, L-leucine and L-glutamine amino acids are examined in vacuum, in bulk water, and at the water-hexane interface, using multi-nanosecond molecular dynamics simulations. The two-dimensional probability distribution functions of finding the peptides at different dihedral angles of the backbone, phi and psi, are calculated, and free energy differences between different conformational states are determined. All three peptides are interfacially active, i.e. tend to accumulate at the interface even though they are not amphiphilic. Conformational states stable in both gas phase and water are also stable in the interfacial environment. Their populations, however, cannot be simply predicted from the knowledge of conformational equilibria in the bulk phases, indicating that the interface exerts a unique effect on the peptides. Conformational preferences in the interfacial environment arise from the interplay between electrostatic and hydrophobic effects. As in an aqueous solution, electrostatic solute-solvent interactions lead to the stabilization of more polar peptide conformations. The hydrophobic effect is manifested at the interface by a tendency to segregate polar and nonpolar moieties of the solute into the aqueous and the hexane phases, respectively. For the terminally blocked glutamine, this favors conformations for which such a segregation is compatible with the formation of strong, backbone-side chain intramolecular hydrogen bonds on the hexane side of the interface. The influence of the hydrophobic effect can be also noted in the orientational preferences of the peptides at the interface. The terminally blocked leucine is oriented such that its nonpolar side chain is buried in hexane, whereas the polar side chain of glutamine is immersed in water. The free energies of rotating the peptides along the axis parallel to the interface by more than 90 degrees are substantial. This indicates that peptide folding at interfaces is strong by driven by the tendency to adopt amphiphilic structures.
使用多纳秒分子动力学模拟,研究了乙酰基和甲基酰胺末端封闭的L - 丙氨酸、L - 亮氨酸和L - 谷氨酰胺氨基酸在真空、本体水以及水 - 己烷界面处的构象平衡。计算了在肽主链不同二面角(φ和ψ)处发现肽的二维概率分布函数,并确定了不同构象状态之间的自由能差。所有三种肽都具有界面活性,即即使它们不是两亲性的,也倾向于在界面处聚集。在气相和水中稳定的构象状态在界面环境中也稳定。然而,它们的分布不能仅根据本体相中的构象平衡知识简单预测,这表明界面会对肽产生独特的影响。界面环境中的构象偏好源于静电和疏水效应之间的相互作用。与在水溶液中一样,静电溶质 - 溶剂相互作用导致更多极性肽构象的稳定。疏水效应在界面处表现为溶质的极性和非极性部分分别倾向于分离到水相和己烷相中。对于末端封闭的谷氨酰胺,这有利于形成这样的构象,即这种分离与在界面己烷侧形成强的主链 - 侧链分子内氢键相兼容。在肽在界面处的取向偏好中也可以注意到疏水效应的影响。末端封闭的亮氨酸的取向使其非极性侧链埋在己烷中,而谷氨酰胺的极性侧链浸入水中。肽沿平行于界面的轴旋转超过90度的自由能很大。这表明界面处的肽折叠强烈地受到形成两亲结构趋势的驱动。