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Catalytic and structural assays for the hairpin ribozyme.

作者信息

Hampel K J, Pinard R, Burke J M

机构信息

Department of Microbiology and Molecular Genetics, University of Vermont, Burlington, Vermont 05405, USA.

出版信息

Methods Enzymol. 2001;341:566-80. doi: 10.1016/s0076-6879(01)41177-3.

DOI:10.1016/s0076-6879(01)41177-3

PMID:11582806

Abstract

摘要

相似文献

Catalytic and structural assays for the hairpin ribozyme.

Methods Enzymol. 2001;341:566-80. doi: 10.1016/s0076-6879(01)41177-3.

Mutagenesis and modeling of the hairpin ribozyme family.

Methods Mol Biol. 1997;74:357-63. doi: 10.1385/0-89603-389-9:357.

Determination of catalytic parameters for hairpin ribozymes.

Methods Mol Biol. 1997;74:209-20. doi: 10.1385/0-89603-389-9:209.

Ligation of RNA molecules by the hairpin ribozyme.

Methods Mol Biol. 1997;74:349-55. doi: 10.1385/0-89603-389-9:349.

Kinetic mechanism of the hairpin ribozyme. Identification and characterization of two nonexchangeable conformations.

J Biol Chem. 1997 May 23;272(21):13629-39. doi: 10.1074/jbc.272.21.13629.

Intracellular ribozyme-catalyzed trans-cleavage of RNA monitored by fluorescence resonance energy transfer.

RNA. 2000 Apr;6(4):628-37. doi: 10.1017/s1355838200990964.

Molecular palaeontology: understanding catalytic mechanisms in the RNA world by excavating clues from a ribozyme three-dimensional structure.

Biochem Soc Trans. 1996 Aug;24(3):604-8. doi: 10.1042/bst0240604.

RNA substrate binding site in the catalytic core of the Tetrahymena ribozyme.

Nature. 1992 Jul 9;358(6382):123-8. doi: 10.1038/358123a0.

The hammerhead RNA domain, a model ribozyme.

Biochim Biophys Acta. 1993 Dec 14;1216(3):345-59. doi: 10.1016/0167-4781(93)90001-t.

Kinetics and thermodynamics of intermolecular catalysis by hairpin ribozymes.

Biochemistry. 1995 Dec 5;34(48):15813-28. doi: 10.1021/bi00048a027.

引用本文的文献

Mutational inhibition of ligation in the hairpin ribozyme: substitutions of conserved nucleobases A9 and A10 destabilize tertiary structure and selectively promote cleavage.

RNA. 2008 Jan;14(1):55-65. doi: 10.1261/rna.716108. Epub 2007 Nov 12.

Competitive regulation of modular allosteric aptazymes by a small molecule and oligonucleotide effector.

RNA. 2005 Oct;11(10):1514-20. doi: 10.1261/rna.2840805.

Sensing complex regulatory networks by conformationally controlled hairpin ribozymes.

Nucleic Acids Res. 2004 Jun 15;32(10):3212-9. doi: 10.1093/nar/gkh643. Print 2004.

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Catalytic and structural assays for the hairpin ribozyme.

作者信息

Hampel K J, Pinard R, Burke J M

机构信息

Department of Microbiology and Molecular Genetics, University of Vermont, Burlington, Vermont 05405, USA.

出版信息

Methods Enzymol. 2001;341:566-80. doi: 10.1016/s0076-6879(01)41177-3.

DOI:10.1016/s0076-6879(01)41177-3

PMID:11582806

Abstract

摘要

相似文献

Catalytic and structural assays for the hairpin ribozyme.

Methods Enzymol. 2001;341:566-80. doi: 10.1016/s0076-6879(01)41177-3.

Mutagenesis and modeling of the hairpin ribozyme family.

Methods Mol Biol. 1997;74:357-63. doi: 10.1385/0-89603-389-9:357.

Determination of catalytic parameters for hairpin ribozymes.

Methods Mol Biol. 1997;74:209-20. doi: 10.1385/0-89603-389-9:209.

Ligation of RNA molecules by the hairpin ribozyme.

Methods Mol Biol. 1997;74:349-55. doi: 10.1385/0-89603-389-9:349.

Kinetic mechanism of the hairpin ribozyme. Identification and characterization of two nonexchangeable conformations.

J Biol Chem. 1997 May 23;272(21):13629-39. doi: 10.1074/jbc.272.21.13629.

Intracellular ribozyme-catalyzed trans-cleavage of RNA monitored by fluorescence resonance energy transfer.

RNA. 2000 Apr;6(4):628-37. doi: 10.1017/s1355838200990964.

Molecular palaeontology: understanding catalytic mechanisms in the RNA world by excavating clues from a ribozyme three-dimensional structure.

Biochem Soc Trans. 1996 Aug;24(3):604-8. doi: 10.1042/bst0240604.

RNA substrate binding site in the catalytic core of the Tetrahymena ribozyme.

Nature. 1992 Jul 9;358(6382):123-8. doi: 10.1038/358123a0.

The hammerhead RNA domain, a model ribozyme.

Biochim Biophys Acta. 1993 Dec 14;1216(3):345-59. doi: 10.1016/0167-4781(93)90001-t.

Kinetics and thermodynamics of intermolecular catalysis by hairpin ribozymes.

Biochemistry. 1995 Dec 5;34(48):15813-28. doi: 10.1021/bi00048a027.

引用本文的文献

Mutational inhibition of ligation in the hairpin ribozyme: substitutions of conserved nucleobases A9 and A10 destabilize tertiary structure and selectively promote cleavage.

RNA. 2008 Jan;14(1):55-65. doi: 10.1261/rna.716108. Epub 2007 Nov 12.

Competitive regulation of modular allosteric aptazymes by a small molecule and oligonucleotide effector.

RNA. 2005 Oct;11(10):1514-20. doi: 10.1261/rna.2840805.

Sensing complex regulatory networks by conformationally controlled hairpin ribozymes.

Nucleic Acids Res. 2004 Jun 15;32(10):3212-9. doi: 10.1093/nar/gkh643. Print 2004.