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[L29M] 在亚基-亚基相互作用界面的取代增强了大肠杆菌RecA蛋白对其重组活性重要的特性。

[L29M] substitution in the interface of subunit-subunit interactions enhances Escherichia coli RecA protein properties important for its recombinogenic activity.

作者信息

Chervyakova D, Kagansky A, Petukhov M, Lanzov V

机构信息

Division of Molecular and Radiation Biophysics, Petersburg Nuclear Physics Institute, Russian Academy of Sciences, Gatchina/St. Petersburg, 188300, Russia.

出版信息

J Mol Biol. 2001 Dec 7;314(4):923-35. doi: 10.1006/jmbi.2001.5170.

Abstract

Genetic analysis of RecA protein chimeras and their ancestors, RecAEc (from Escherichia coli) and RecAPa (Pseudomonas aeruginosa) had allowed us to place these proteins with respect to their recombinogenic activities in the following order: RecAPa>RecAX21>RecAX20=RecAEc. While RecAX20 differs from RecAEc in five amino acid residues with two substitutions ([S25A] and [I26V]) at the interface of subunit interactions in the RecA polymer, RecAX20 and RecAX21 differ only by a single substitution [L29M] present at the interface. Here, we present an analysis of the biochemical properties considered important for the recombinogenic activity of all four RecA proteins. While RecAX20 was very similar to RecAEc by all activities analysed, RecAX21 differed from RecAEc in several respects. These differences included an increased affinity for double-stranded DNA, a more active displacement of SSB protein from single-stranded DNA (ssDNA), a decreased end-dependent RecAX21 protein dissociation from a presynaptic complex, and a greater accumulation of intermediate products relative to the final product in the strand-exchange reaction. RecAPa was more tolerant than RecAX21 only to the end-dependent RecA protein dissociation. In addition, RecAPa was more resistant to temperature and salt concentrations in its ability to form a presynaptic RecAPa::ATP::ssDNA filament. Calculations of conformational energy revealed that the [L29M] substitution in RecAX21 polymer caused an increase in its flexibility. This led us to conclude that even a small change in the flexibility of the RecA presynaptic complex could profoundly affect its recombinogenic properties.

摘要

对RecA蛋白嵌合体及其原始蛋白RecAEc(来自大肠杆菌)和RecAPa(铜绿假单胞菌)进行的遗传分析,使我们能够按照重组活性将这些蛋白排列如下顺序:RecAPa>RecAX21>RecAX20=RecAEc。虽然RecAX20与RecAEc在五个氨基酸残基上存在差异,在RecA聚合物的亚基相互作用界面有两个替换([S25A]和[I26V]),但RecAX20和RecAX21仅在界面处存在一个单一替换[L29M]。在此,我们对所有四种RecA蛋白的重组活性所涉及的重要生化特性进行了分析。虽然通过所有分析的活性来看,RecAX20与RecAEc非常相似,但RecAX21在几个方面与RecAEc不同。这些差异包括对双链DNA的亲和力增加、从单链DNA(ssDNA)上更有效地取代单链结合蛋白(SSB)、末端依赖性RecAX21蛋白从突触前复合物上的解离减少,以及在链交换反应中相对于最终产物中间产物的积累更多。RecAPa仅在末端依赖性RecA蛋白解离方面比RecAX21更具耐受性。此外,RecAPa在形成突触前RecAPa::ATP::ssDNA细丝的能力方面对温度和盐浓度更具抗性。构象能量计算表明,RecAX21聚合物中的[L29M]替换导致其柔韧性增加。这使我们得出结论,即使RecA突触前复合物的柔韧性发生微小变化,也可能深刻影响其重组特性。

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