McGee Maria P, Liang Jie, Luba James
Wake Forest University Medical School, Medicine Department, Medical Center Boulevard, Winston-Salem, North Carolina 27157, USA.
Biophys J. 2002 Feb;82(2):1040-9. doi: 10.1016/S0006-3495(02)75463-5.
Antithrombin is a key inhibitor of blood coagulation proteases and a prototype metastable protein. Heparin binding to antithrombin induces conformational transitions distal to the binding site. We applied osmotic stress techniques and rate measurements in the stopped flow fluorometer to investigate the possibility that hydration changes are associated with these transitions. Water transfer was identified from changes in the free energy of activation, Delta G(++), with osmotic pressure pi. The Delta G(++) was determined from the rate of fluorescence enhancement/decrease associated with heparin binding/release. The volume of water transferred, Delta V, was determined from the relationship, Delta G/pi = Delta V. With an osmotic probe of 4 A radius, the volumes transferred correspond to 158 +/- 11 water molecules from reactants to bulk during association and 162 +/- 22 from bulk to reactants during dissociation. Analytical characterization of water-permeable volumes in x-ray-derived bound and free antithrombin structures were correlated with the volumes measured in solution. Volume changes in water permeable pockets were identified at the loop-insertion and heparin-binding regions. Analyses of the pockets' atomic composition indicate that residues Ser-79, Ala-86, Val-214, Leu-215, Asn-217, Ile-219, and Thr-218 contribute atoms to both the heparin-binding pockets and to the loop-insertion region. These results demonstrate that the increases and decreases in the intrinsic fluorescence of antithrombin during heparin binding and release are linked to dehydration and hydration reactions, respectively. Together with the structural analyses, results also suggest a direct mechanism linking heparin binding/release to loop expulsion/insertion.
抗凝血酶是血液凝固蛋白酶的关键抑制剂,也是一种典型的亚稳蛋白。肝素与抗凝血酶的结合会在结合位点远端诱导构象转变。我们应用渗透压技术和停流荧光计中的速率测量来研究水合变化与这些转变相关的可能性。通过活化自由能(ΔG‡)随渗透压(π)的变化来确定水的转移。ΔG‡由与肝素结合/释放相关的荧光增强/减弱速率确定。转移的水量(ΔV)由ΔG/π = ΔV的关系确定。使用半径为4 Å的渗透探针,结合过程中从反应物转移到本体的水量为158±11个水分子,解离过程中从本体转移到反应物的水量为162±22个水分子。对X射线衍生的结合态和游离态抗凝血酶结构中透水体积的分析表征与溶液中测量的体积相关。在环插入和肝素结合区域发现了透水口袋中的体积变化。对口袋原子组成的分析表明,Ser-79、Ala-86、Val-214、Leu-215、Asn-217、Ile-219和Thr-218残基的原子既参与肝素结合口袋,也参与环插入区域。这些结果表明,肝素结合和释放过程中抗凝血酶固有荧光的增加和减少分别与脱水和水合反应相关。结合结构分析,结果还表明了一种将肝素结合/释放与环排出/插入联系起来的直接机制。