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采用生物信息学策略克隆人类髓鞘蛋白零样基因

Cloning of Human Myelin Protein Zero-like Genes by Bioinformatics Strategy.

作者信息

Tang Dong-Sheng, Yu Kuan-Ping, Tang Xi-Xiang, Zhang Hua-Li, Pan Qian, Dai He-Ping, Xia Jia-Hui

机构信息

National Laboratory of Medical Genetics of China, Hunan Medical University, Changsha 410078, China.

出版信息

Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai). 2000;32(4):364-368.

Abstract

To clone novel myelin protein related genes, two human ESTs, which shared significant similarity with the human myelin protein zero gene, were found by the comparison of homologue between the cDNA coding region sequences of MPZ gene and the EST database of NCBI. An 801 bp EST contig was assembled, which was 100% identical with a 128 kb genomic sequence, mapped to 1q24. A 435 bp open reading frame (ORF) within the 801 bp contig was shown by computer analysis. Two primers designed according to the sequence of the contig, were coupled with the primers(lambdagt10-5 and gt10-5) on the sequences flanking cloning site of the cDNA library vector to amplify the cDNA library sequences by nested PCR. New primers, designed based on novel cDNA sequences, were used for the PCR amplification with lambdagt10-5 and gt10-5 in the same way as above. Finally, the human myelin protein zero like gene isoform I and II (MPZL1a, MPZL1b GenBank AF095727, AF092424) were cloned. Comparison of gene and protein structures between MPZL1 and MPZ revealed that MPZL1 is the second member of MPZ family. Mutation analysis of MPZL1 gene was performed in 24 Charcot-Marie-Tooth disease (CMT) families and 26 nonsyndrome deafness families, but no mutation was found.

摘要

为克隆新的髓磷脂蛋白相关基因,通过比较髓磷脂蛋白零(MPZ)基因的cDNA编码区序列与美国国立医学图书馆(NCBI)的EST数据库中的同源物,发现了两个与人类髓磷脂蛋白零基因具有显著相似性的人类EST。组装了一个801 bp的EST重叠群,它与一个128 kb的基因组序列100%相同,定位于1q24。计算机分析显示在801 bp重叠群中有一个435 bp的开放阅读框(ORF)。根据重叠群序列设计的两个引物,与cDNA文库载体克隆位点侧翼序列上的引物(λgt10-5和gt10-5)结合,通过巢式PCR扩增cDNA文库序列。基于新的cDNA序列设计的新引物,以与上述相同的方式与λgt10-5和gt10-5一起用于PCR扩增。最终,克隆出了人类髓磷脂蛋白零样基因亚型I和II(MPZL1a、MPZL1b,GenBank登录号:AF095727、AF092424)。MPZL1和MPZ之间的基因和蛋白质结构比较表明,MPZL1是MPZ家族的第二个成员。对24个夏科-马里-图斯病(CMT)家系和26个非综合征性耳聋家系进行了MPZL1基因突变分析,但未发现突变。

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