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利用凝胶中生长的晶体实现原子分辨率:室温下甜蛋白的实例

Towards atomic resolution with crystals grown in gel: the case of thaumatin seen at room temperature.

作者信息

Sauter Claude, Lorber Bernard, Giegé Richard

机构信息

Département Mécanismes et Macromolécules de la Synthèse Protéique et Cristallogenèse, UPR 9002, Institut de Biologie Moléculaire et Cellulaire du CNRS, Strasbourg, France.

出版信息

Proteins. 2002 Aug 1;48(2):146-50. doi: 10.1002/prot.10125.

Abstract

One reason for introducing a gel in the crystallization medium of proteins is its ability to reduce convection in solution. This can lead to better nucleation and growth conditions, and to crystals having enhanced diffraction properties. We report here the X-ray characterization at room temperature of high-quality crystals of the intensely sweet thaumatin prepared in a sodium tartrate solution gelified with 0.15% (m/v) agarose. Using a synchrotron radiation, these crystals diffracted to a previously unachieved resolution. A diffraction dataset was collected from four crystals at a resolution of 1.2 A with a R(sym) of 3.6% and a completeness of 99%. Refinement was carried out to a final crystallographic R-factor of 12.0%. The quality of the electron density map allowed for the observation of fine structural details in the protein and its solvation shell. Crystallization in gel might be used more generally to improve the quality of macromolecular crystals. Advantages provided by the gelified medium in the frame of structural studies are emphasized.

摘要

在蛋白质结晶介质中引入凝胶的一个原因是其能够减少溶液中的对流。这可以导致更好的成核和生长条件,并得到具有增强衍射特性的晶体。我们在此报告在由0.15%(m/v)琼脂糖凝胶化的酒石酸钠溶液中制备的高甜度奇异果甜蛋白高质量晶体在室温下的X射线表征。使用同步辐射,这些晶体衍射到了之前未达到的分辨率。从四个晶体收集了分辨率为1.2 Å的衍射数据集,R(sym)为3.6%,完整性为99%。精修至最终晶体学R因子为12.0%。电子密度图的质量使得能够观察到蛋白质及其溶剂化层中的精细结构细节。凝胶中的结晶可能更普遍地用于提高大分子晶体的质量。强调了凝胶化介质在结构研究框架中提供的优势。

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