Lekanne Deprez Ronald H, Fijnvandraat Arnoud C, Ruijter Jan M, Moorman Antoon F M
Experimental and Molecular Cardiology Group, Academic Medical Center, Meibergdreef 15, 1105 AZ Amsterdam, The Netherlands.
Anal Biochem. 2002 Aug 1;307(1):63-9. doi: 10.1016/s0003-2697(02)00021-0.
The recent development of real-time PCR has offered the opportunity of sensitive and accurate quantification of mRNA levels that is crucial in biomedical research. Although reverse transcription (RT)-PCR is at present the most sensitive method available, many low abundant mRNAs are, although detectable, often not quantifiable. Here we report an improved two-step real-time RT-PCR procedure using SYBR green I and the LightCycler that better permits accurate quantification of mRNAs. Omission of dithiothreitol from the cDNA synthesis reaction was found to be crucial. This resulted in a lower cycle number at which the cDNA level is determined (C(T) value), steeper amplification curves, and removal of background fluorescence in the subsequent PCR. In addition, the choice of the cDNA priming oligo can improve detection sensitivity even further. In contrast to hexamer primer usage, both gene-specific and oligo-dT(VN) priming were very efficient and accurate, with gene-specific priming being the most sensitive. Finally, accurate quantification of mRNAs by real-time PCR using SYBR green I requires verification of the specificity of PCR by both melting curve and gel analysis.
实时聚合酶链反应(PCR)的最新进展为生物医学研究中至关重要的mRNA水平的灵敏且准确的定量提供了机会。尽管逆转录(RT)-PCR目前是可用的最灵敏方法,但许多低丰度mRNA虽然可检测到,但往往无法定量。在此,我们报告一种改进的两步实时RT-PCR程序,该程序使用SYBR Green I和LightCycler,能更好地实现mRNA的准确定量。发现从cDNA合成反应中省略二硫苏糖醇至关重要。这导致确定cDNA水平时的循环数更低(C(T)值)、扩增曲线更陡峭,并消除了后续PCR中的背景荧光。此外,cDNA引物寡核苷酸的选择可进一步提高检测灵敏度。与使用六聚体引物不同,基因特异性引物和寡聚-dT(VN)引物都非常高效且准确,其中基因特异性引物最为灵敏。最后,使用SYBR Green I通过实时PCR对mRNA进行准确定量需要通过熔解曲线和凝胶分析来验证PCR的特异性。