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本文引用的文献
1
All-atom empirical potential for molecular modeling and dynamics studies of proteins.
J Phys Chem B. 1998 Apr 30;102(18):3586-616. doi: 10.1021/jp973084f.
2
Identification of a protein-promoting vibration in the reaction catalyzed by horse liver alcohol dehydrogenase.
J Am Chem Soc. 2002 Apr 3;124(13):3270-6. doi: 10.1021/ja017146y.
3
Dynamic structures of horse liver alcohol dehydrogenase (HLADH): results of molecular dynamics simulations of HLADH-NAD(+)-PhCH(2)OH, HLADH-NAD(+)-PhCH(2)O(-), and HLADH-NADH-PhCHO.
J Am Chem Soc. 2001 Dec 5;123(48):11952-9. doi: 10.1021/ja0109747.
4
A link between protein structure and enzyme catalyzed hydrogen tunneling.
Proc Natl Acad Sci U S A. 1997 Nov 25;94(24):12797-802. doi: 10.1073/pnas.94.24.12797.
5
Structures of horse liver alcohol dehydrogenase complexed with NAD+ and substituted benzyl alcohols.
Biochemistry. 1994 May 3;33(17):5230-7. doi: 10.1021/bi00183a028.
6
Interdomain motion in liver alcohol dehydrogenase. Structural and energetic analysis of the hinge bending mode.
J Biol Chem. 1986 Nov 15;261(32):15273-80.
7
General base catalysis in a glutamine for histidine mutant at position 51 of human liver alcohol dehydrogenase.
Biochemistry. 1991 Jan 29;30(4):1062-8. doi: 10.1021/bi00218a026.
8
Collective motions in proteins: a covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations.
Proteins. 1991;11(3):205-17. doi: 10.1002/prot.340110305.
9
Three-dimensional structure of horse liver alcohol dehydrogenase at 2-4 A resolution.
J Mol Biol. 1976 Mar 25;102(1):27-59. doi: 10.1016/0022-2836(76)90072-3.
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