Guidoni Leonardo, Carloni Paolo
INFM-Democritos Center for Molecular Simulations and International School for Advanced Studies (SISSA), Via Beirut 4, 1-34014 Trieste, Italy.
J Recept Signal Transduct Res. 2002 Feb-Nov;22(1-4):315-31. doi: 10.1081/rrs-120014604.
Extracellular tetraethylammonium (TEA+) inhibits the current carried out by K+ ions in potassium channels. Structural models of wild-type (WT) and Y82C KcsA K+ channel/TEA+ complexes are here built using docking procedures, electrostatics calculations and molecular dynamics simulations. The calculations are based on the structure determined by Doyle et al. (11) Our calculations suggest that in WT, the TEA+ cation turns binds at the outer mouth of the selectivity filter, stabilized by electrostatic and hydrophobic interactions with the four Tyr82 side chains. Replacement of Tyr82 with Cys causes a decrease of the affinity of the cation for the channel, consistently with the available site-directed mutagenesis data (16). An MD simulation in which K+ replaces TEA+ provides evidence that TEA+ binding site can accommodate a potassium ion, in agreement with the high-resolution structure recently reported by Zhou et al. (20)
细胞外四乙铵(TEA+)可抑制钾通道中钾离子所携带的电流。本文利用对接程序、静电计算和分子动力学模拟构建了野生型(WT)和Y82C KcsA钾通道/TEA+复合物的结构模型。这些计算基于多伊尔等人(11)确定的结构。我们的计算表明,在野生型中,TEA+阳离子转而结合在选择性过滤器的外口,通过与四个Tyr82侧链的静电和疏水相互作用得以稳定。用半胱氨酸取代Tyr82会导致阳离子与通道的亲和力降低,这与现有的定点诱变数据(16)一致。用钾离子取代TEA+的分子动力学模拟提供了证据,表明TEA+结合位点可以容纳钾离子,这与周等人(20)最近报道的高分辨率结构一致。