相似文献
1
Localization of denaturation bubbles in random DNA sequences.
Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4411-6. doi: 10.1073/pnas.0736291100. Epub 2003 Apr 2.
2
DNA denaturation bubbles at criticality.
Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Mar;77(3 Pt 1):031919. doi: 10.1103/PhysRevE.77.031919. Epub 2008 Mar 24.
3
Randomly forced DNA.
Phys Rev Lett. 2007 Mar 2;98(9):098101. doi: 10.1103/PhysRevLett.98.098101. Epub 2007 Feb 26.
4
Torsional stress and local denaturation in supercoiled DNA.
Proc Natl Acad Sci U S A. 1979 Aug;76(8):3870-4. doi: 10.1073/pnas.76.8.3870.
5
Thermodynamics of the melting of PNA(2)/DNA triple helices.
J Biomol Struct Dyn. 2001 Dec;19(3):535-42. doi: 10.1080/07391102.2001.10506761.
6
Melting of confined DNA: static and dynamic properties.
Soft Matter. 2022 Apr 6;18(14):2790-2799. doi: 10.1039/d2sm00220e.
7
Theoretical investigation of finite size effects at DNA melting.
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Aug;76(2 Pt 1):021917. doi: 10.1103/PhysRevE.76.021917. Epub 2007 Aug 17.
8
Heat capacity effects on the melting of DNA. 2. Analysis of nearest-neighbor base pair effects.
Biophys J. 1999 Dec;77(6):3252-5. doi: 10.1016/S0006-3495(99)77156-0.
9
Dynamics of DNA breathing: weak noise analysis, finite time singularity, and mapping onto the quantum Coulomb problem.
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Dec;76(6 Pt 1):061915. doi: 10.1103/PhysRevE.76.061915. Epub 2007 Dec 21.
10
Thermodynamics of local DNA openings.
Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Nov;64(5 Pt 1):051919. doi: 10.1103/PhysRevE.64.051919. Epub 2001 Oct 29.
引用本文的文献
1
The 'very moment' when UDG recognizes a flipped-out uracil base in dsDNA.
Sci Rep. 2025 Mar 7;15(1):7993. doi: 10.1038/s41598-025-91705-6.
2
Influence of a Single Deuterium Substitution for Protium on the Frequency Generation of Different-Size Bubbles in IFNA17.
Int J Mol Sci. 2023 Jul 28;24(15):12137. doi: 10.3390/ijms241512137.
3
Observation of universal ageing dynamics in antibiotic persistence.
Nature. 2021 Dec;600(7888):290-294. doi: 10.1038/s41586-021-04114-w. Epub 2021 Nov 17.
4
Inequality in the Frequency of the Open States Occurrence Depends on Single H/H Replacement in DNA.
Molecules. 2020 Aug 18;25(16):3753. doi: 10.3390/molecules25163753.
5
Dynamics of supercoiled DNA with complex knots: large-scale rearrangements and persistent multi-strand interlocking.
Nucleic Acids Res. 2018 Sep 6;46(15):7533-7541. doi: 10.1093/nar/gky523.
6
Dynamic approach to DNA breathing.
J Biol Phys. 2005 Dec;31(3-4):339-50. doi: 10.1007/s10867-005-2410-y.
7
Real-time detection of cruciform extrusion by single-molecule DNA nanomanipulation.
Nucleic Acids Res. 2011 May;39(10):4275-83. doi: 10.1093/nar/gkr008. Epub 2011 Jan 25.
8
Computing DNA duplex instability profiles efficiently with a two-state model: trends of promoters and binding sites.
BMC Bioinformatics. 2010 Dec 21;11:604. doi: 10.1186/1471-2105-11-604.
9
Localization and delocalization of energy in a Peyrard-Bishop chain.
Eur Phys J E Soft Matter. 2009 Jun;29(2):245-51. doi: 10.1140/epje/i2009-10475-9. Epub 2009 Jun 24.
10
Breathing dynamics in heteropolymer DNA.
Biophys J. 2007 Apr 15;92(8):2674-84. doi: 10.1529/biophysj.106.095935. Epub 2007 Jan 19.
本文引用的文献
1
Subdiffusion and localization in the one-dimensional trap model.
Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Feb;67(2 Pt 2):026128. doi: 10.1103/PhysRevE.67.026128. Epub 2003 Feb 27.
2
Physical constraints and functional characteristics of transcription factor-DNA interaction.
Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12015-20. doi: 10.1073/pnas.192693599. Epub 2002 Sep 6.
3
Single molecule statistics and the polynucleotide unzipping transition.
Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Mar;65(3 Pt 1):031917. doi: 10.1103/PhysRevE.65.031917. Epub 2002 Mar 6.
4
Unzipping DNA with optical tweezers: high sequence sensitivity and force flips.
Biophys J. 2002 Mar;82(3):1537-53. doi: 10.1016/S0006-3495(02)75506-9.
5
Statistical significance of probabilistic sequence alignment and related local hidden Markov models.
J Comput Biol. 2001;8(3):249-82. doi: 10.1089/10665270152530845.
6
Rare-event induced binding transition of heteropolymers.
Phys Rev Lett. 2001 Jan 29;86(5):830-3. doi: 10.1103/PhysRevLett.86.830.
7
Force-induced melting of the DNA double helix 1. Thermodynamic analysis.
Biophys J. 2001 Feb;80(2):882-93. doi: 10.1016/S0006-3495(01)76067-5.
8
Why is the DNA denaturation transition first order?
Phys Rev Lett. 2000 Dec 4;85(23):4988-91. doi: 10.1103/PhysRevLett.85.4988.
9
Stress-induced structural transitions in DNA and proteins.
Annu Rev Biophys Biomol Struct. 2000;29:523-43. doi: 10.1146/annurev.biophys.29.1.523.
10
Statistical mechanical simulation of polymeric DNA melting with MELTSIM.
Bioinformatics. 1999 May;15(5):370-5. doi: 10.1093/bioinformatics/15.5.370.
Zotero 插件