Resat Haluk, Ewald Jonathan A, Dixon David A, Wiley H Steven
Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.
Biophys J. 2003 Aug;85(2):730-43. doi: 10.1016/s0006-3495(03)74516-0.
Endocytic trafficking of many types of receptors can have profound effects on subsequent signaling events. Quantitative models of these processes, however, have usually considered trafficking and signaling independently. Here, we present an integrated model of both the trafficking and signaling pathway of the epidermal growth factor receptor (EGFR) using a probability weighted-dynamic Monte Carlo simulation. Our model consists of hundreds of distinct endocytic compartments and approximately 13,000 reactions/events that occur over a broad spatio-temporal range. By using a realistic multicompartment model, we can investigate the distribution of the receptors among cellular compartments as well as their potential signal transduction characteristics. Our new model also allows the incorporation of physiochemical aspects of ligand-receptor interactions, such as pH-dependent binding in different endosomal compartments. To determine the utility of this approach, we simulated the differential activation of the EGFR by two of its ligands, epidermal growth factor (EGF) and transforming growth factor-alpha (TGF-alpha). Our simulations predict that when EGFR is activated with TGF-alpha, receptor activation is biased toward the cell surface whereas EGF produces a signaling bias toward the endosomal compartment. Experiments confirm these predictions from our model and simulations. Our model accurately predicts the kinetics and extent of receptor downregulation induced by either EGF or TGF-alpha. Our results suggest that receptor trafficking controls the compartmental bias of signal transduction, rather than simply modulating signal magnitude. Our model provides a new approach to evaluating the complex effect of receptor trafficking on signal transduction. Importantly, the stochastic and compartmental nature of the simulation allows these models to be directly tested by high-throughput approaches, such as quantitative image analysis.
多种类型受体的内吞运输可对后续信号转导事件产生深远影响。然而,这些过程的定量模型通常独立地考虑运输和信号转导。在此,我们使用概率加权动态蒙特卡罗模拟,提出了表皮生长因子受体(EGFR)运输和信号转导途径的综合模型。我们的模型由数百个不同的内吞区室和约13000个反应/事件组成,这些反应/事件发生在广泛的时空范围内。通过使用逼真的多区室模型,我们可以研究受体在细胞区室中的分布及其潜在的信号转导特性。我们的新模型还允许纳入配体-受体相互作用的物理化学方面,例如不同内体区室中pH依赖性结合。为了确定这种方法的实用性,我们模拟了EGFR的两种配体,即表皮生长因子(EGF)和转化生长因子-α(TGF-α)对其的差异激活。我们的模拟预测,当EGFR被TGF-α激活时,受体激活偏向细胞表面,而EGF则产生偏向内体区室的信号转导。实验证实了我们模型和模拟的这些预测。我们的模型准确地预测了EGF或TGF-α诱导的受体下调的动力学和程度。我们的结果表明,受体运输控制信号转导的区室偏向,而不仅仅是调节信号强度。我们的模型提供了一种新方法来评估受体运输对信号转导的复杂影响。重要的是,模拟的随机性和区室性质使得这些模型可以通过高通量方法,如定量图像分析,直接进行测试。