Spence J C H, Weierstall U, Fricke T T, Glaeser R M, Downing K H
Department of Physics, Arizona State University, Tempe, AZ 85287-1504, USA.
J Struct Biol. 2003 Oct-Nov;144(1-2):209-18. doi: 10.1016/j.jsb.2003.09.019.
The use of a compact support constraint along the beam direction is considered as a solution to the phase problem for diffraction by two-dimensional protein crystals. Specifically we apply the iterative Gerchberg-Saxton-Fienup algorithm to simulated three-dimensional transmission electron diffraction data from monolayer organic crystals. We find that oversampling along the reciprocal-lattice rods (relrods) normal to the monolayer alone does not solve the phase problem in this geometry in general. However, based on simulations for a crystalline protein monolayer (lysozyme), we find that convergence is obtained in three dimensions if phases are supplied from a few high resolution electron microscope images recorded at small tilts to the beam direction. In the absence of noise, amplitude-weighted phase residuals of around 5 degrees, and a cross-correlation coefficient of 0.96 between the true and estimated potential are obtained if phases are included from images at tilts of up to 15 degrees. The performance is almost as good in the presence of noise at a level that is comparable to that commonly observed in electron crystallography of proteins. The method should greatly reduce the time and labor needed for data acquisition and analysis in cryo-electron microscopy of organic thin crystals by avoiding the need to record images at high tilt angles.
沿光束方向使用紧支约束被认为是解决二维蛋白质晶体衍射相位问题的一种方法。具体而言,我们将迭代的Gerchberg-Saxton-Fienup算法应用于单层有机晶体的模拟三维透射电子衍射数据。我们发现,仅在垂直于单层的倒易晶格杆(relrods)方向上进行过采样,通常并不能解决这种几何结构下的相位问题。然而,基于对结晶蛋白质单层(溶菌酶)的模拟,我们发现,如果从在与光束方向小角度倾斜下记录的一些高分辨率电子显微镜图像中提供相位,那么在三维空间中可以实现收敛。在无噪声的情况下,如果包含来自高达15度倾斜角度图像的相位,则可获得约5度的幅度加权相位残差,以及真实势与估计势之间0.96的互相关系数。在存在与蛋白质电子晶体学中常见噪声水平相当的噪声时,该方法的性能几乎同样良好。该方法通过避免在高倾斜角度下记录图像,应能大大减少有机薄晶体低温电子显微镜中数据采集和分析所需的时间和工作量。