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NUREBASE更新:核激素受体功能基因组学

Update of NUREBASE: nuclear hormone receptor functional genomics.

作者信息

Ruau David, Duarte Jorge, Ourjdal Tarik, Perrière Guy, Laudet Vincent, Robinson-Rechavi Marc

机构信息

Laboratoire de Biologie Moléculaire de la Cellule, CNRS UMR 5161, Ecole Normale Supérieure de Lyon, 46 allée d'Italie, 69364 Lyon Cedex 07, France.

出版信息

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D165-7. doi: 10.1093/nar/gkh062.

Abstract

Nuclear hormone receptors are an abundant class of ligand-activated transcriptional regulators, found in varying numbers in all animals. Based on our experience of managing the official nomenclature of nuclear receptors, we have developed NUREBASE, a database containing protein and DNA sequences, reviewed protein alignments and phylogenies, taxonomy and annotations for all nuclear receptors. New developments in NUREBASE include explicit declaration of alternative transcripts of each gene, and expression data for human and mouse nuclear receptors. The core of NUREBASE is reviewed, and it is completed by NUREBASE_DAILY, automatically updated every 24 h. All information on accessing and installing NUREBASE may be found at http://www. ens-lyon.fr/LBMC/laudet/nurebase/nurebase.html.

摘要

核激素受体是一类丰富的配体激活转录调节因子,在所有动物中数量不等。基于我们管理核受体官方命名法的经验,我们开发了NUREBASE数据库,其中包含所有核受体的蛋白质和DNA序列、经过审核的蛋白质比对和系统发育、分类学及注释。NUREBASE的新进展包括明确声明每个基因的可变转录本,以及人类和小鼠核受体的表达数据。NUREBASE的核心内容经过审核,由NUREBASE_DAILY完成补充,后者每24小时自动更新一次。有关访问和安装NUREBASE的所有信息可在http://www. ens-lyon.fr/LBMC/laudet/nurebase/nurebase.html上找到。

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