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半胱氨酸硫基自由基的电子结构:一项密度泛函理论和相关从头算研究。

Electronic structure of the cysteine thiyl radical: a DFT and correlated ab initio study.

作者信息

van Gastel Maurice, Lubitz Wolfgang, Lassmann Günter, Neese Frank

机构信息

Max-Planck-Institut für Bioanorganische Chemie, Stiftstrasse 34-36, D-45470, Muelheim on the Ruhr, Germany.

出版信息

J Am Chem Soc. 2004 Feb 25;126(7):2237-46. doi: 10.1021/ja038813l.

Abstract

The electronic structure and the unusual EPR parameters of sulfur-centered alkyl thiyl radical from cysteine are investigated by density functional theory (DFT) and correlated ab initio calculations. Three geometry-optimized, staggered conformations of the radical are found that lie within 630 cm(-1) in energy. The EPR g-values are sensitive to the energy difference between the nearly-degenerate singly occupied orbital and one of the lone-pair orbitals (excitation energies of 1732, 1083, and 3429 cm(-1) from Multireference Configuration Interaction calculations for the structures corresponding to the three minima), both of which are almost pure sulfur 3p orbitals. Because of the near degeneracy, the second order correction to the g tensor, which is widely used to analyze g-values of paramagnetic systems, is insufficient to obtain accurate g-values of the cysteine thiyl radical. Instead, an expression for the g tensor must be used in which third order corrections are taken into account. The near-degeneracy can be affected to roughly equal extents by changes in the structure of the radical and by hydrogen bonds to the sulfur. The magnitude of the hyperfine coupling constants for the beta protons of the cysteine thiyl radical is found to depend on the structure of the radical. On the basis of a detailed comparison between experimental and calculated g-values and hyperfine coupling constants an attempt is made to identify the structure of thiyl radicals and the number of hydrogen bonds to the sulfur.

摘要

通过密度泛函理论(DFT)和相关的从头算计算,研究了来自半胱氨酸的以硫为中心的烷基硫自由基的电子结构和异常的电子顺磁共振(EPR)参数。发现该自由基有三种几何优化的交错构象,其能量在630 cm⁻¹以内。EPR g值对近简并单占据轨道和孤对轨道之一之间的能量差敏感(对于对应于三个极小值的结构,多参考组态相互作用计算的激发能分别为1732、1083和3429 cm⁻¹),这两个轨道几乎都是纯硫3p轨道。由于近简并性,广泛用于分析顺磁系统g值的g张量二阶校正不足以获得半胱氨酸硫自由基的准确g值。相反,必须使用考虑三阶校正的g张量表达式。近简并性受自由基结构变化和与硫的氢键影响的程度大致相同。发现半胱氨酸硫自由基β质子的超精细耦合常数大小取决于自由基的结构。基于实验和计算的g值以及超精细耦合常数之间的详细比较,尝试确定硫自由基的结构以及与硫的氢键数量。

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