Makhatadze George I, Loladze Vakhtang V, Gribenko Alexey V, Lopez Maria M
Department of Biochemistry and Molecular Biology, Penn State University, College of Medicine, Hershey, PA 17033, USA.
J Mol Biol. 2004 Feb 27;336(4):929-42. doi: 10.1016/j.jmb.2003.12.058.
Using computational and sequence analysis of bacterial cold shock proteins, we designed a protein (CspB-TB) that has the core residues of mesophilic protein from Bacillus subtilis(CspB-Bs) and altered distribution of surface charged residues. This designed protein was characterized by circular dichroism spectroscopy, and found to have secondary and tertiary structure similar to that of CspB-Bs. The activity of the CspB-TB protein as measured by the affinity to a single-stranded DNA (ssDNA) template at 25 degrees C is somewhat higher than that of CspB-Bs. Furthermore, the decrease in the apparent binding constant to ssDNA upon increase in temperature is much more pronounced for CspB-Bs than for CspB-TB. Temperature-induced unfolding (as monitored by differential scanning calorimetry and circular dichroism spectroscopy) and urea-induced unfolding experiments were used to compare the stabilities of CspB-Bs and CspB-TB. It was found that CspB-TB is approximately 20 degrees C more thermostable than CspB-Bs. The thermostabilization of CspB-TB relative to CspB-Bs is achieved by decrease in the enthalpy and entropy of unfolding without affecting their temperature dependencies, i.e. these proteins have similar heat capacity changes upon unfolding. These changes in the thermodynamic parameters result in the global stability function, i.e. Gibbs energy, deltaG(T), that is shifted to higher temperatures with only small changes in the maximum stability. Such a mechanism of thermostabilization, although predicted from the basic thermodynamic considerations, has never been identified experimentally.
通过对细菌冷休克蛋白进行计算和序列分析,我们设计了一种蛋白质(CspB-TB),它具有来自枯草芽孢杆菌的嗜温蛋白(CspB-Bs)的核心残基,并改变了表面带电残基的分布。通过圆二色光谱对这种设计的蛋白质进行了表征,发现其二级和三级结构与CspB-Bs相似。通过在25摄氏度下对单链DNA(ssDNA)模板的亲和力来测量,CspB-TB蛋白的活性略高于CspB-Bs。此外,温度升高时,CspB-Bs对ssDNA的表观结合常数的降低比对CspB-TB更为明显。利用温度诱导的解折叠(通过差示扫描量热法和圆二色光谱监测)和尿素诱导的解折叠实验来比较CspB-Bs和CspB-TB的稳定性。发现CspB-TB比CspB-Bs的热稳定性高约20摄氏度。CspB-TB相对于CspB-Bs的热稳定性提高是通过降低解折叠的焓和熵实现的,而不影响它们对温度的依赖性,即这些蛋白质在解折叠时具有相似的热容变化。这些热力学参数的变化导致了全局稳定性函数,即吉布斯自由能ΔG(T),其向更高温度移动,而最大稳定性只有很小的变化。这种热稳定机制虽然从基本的热力学考虑中可以预测,但从未通过实验得到证实。