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神经细胞黏附分子(NCAM)的第一、第二和第三免疫球蛋白模块的主链动力学

Backbone dynamics of the first, second, and third immunoglobulin modules of the neural cell adhesion molecule (NCAM).

作者信息

Thormann Thorsten, Soroka Vladislav, Nielbo Steen, Berezin Vladimir, Bock Elisabeth, Poulsen Flemming M

机构信息

Department of Protein Chemistry, Institute of Molecular Biology, University of Copenhagen, Øster Farimagsgade 2A, DK-1353 Copenhagen, Denmark.

出版信息

Biochemistry. 2004 Aug 17;43(32):10364-9. doi: 10.1021/bi0495679.

Abstract

The neural cell adhesion molecule (NCAM) is a cell surface multimodular protein, which plays an important role in cell-cell adhesion by homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM molecules) binding. In the present study, the backbone dynamics of the first three immunoglobulin-like (Ig) modules of NCAM have been investigated by NMR spectroscopy. Ig1, Ig2, and Ig3 share low sequence identity but possess the same fold and have very similar three-dimensional structures. (15)N longitudinal and transverse relaxation rates and heteronuclear NOEs have been measured and subsequently analyzed by the axial symmetric Lipari-Szabo modelfree formalism to characterize fast (pico- to nanosecond) and slow (micro- to millisecond) motions in the three protein modules. We found that backbone motions of residues located in the beta-strand regions are generally restricted, while increased flexibility is observed in turns and loops. In all three modules, residues located in the segments connecting the C- and D-strand plus residues located in the segment connecting the E- and F-strand show significant chemical exchange on the micro- to millisecond time scale. In addition, a number of residues with small chemical exchange contribution seem to form contiguous regions in the beta sheets, suggesting that these motions might be correlated. Only few residues in the homophilic binding sites in the NCAM Ig1 and Ig2 modules show increased flexibility, indicating that the Ig1-Ig2-mediated NCAM homophilic binding does not depend on the local backbone mobility of the interacting modules.

摘要

神经细胞黏附分子(NCAM)是一种细胞表面多模块蛋白,它通过同源性(NCAM-NCAM)和异源性(NCAM-非NCAM分子)结合在细胞间黏附中发挥重要作用。在本研究中,通过核磁共振光谱研究了NCAM的前三个免疫球蛋白样(Ig)模块的主链动力学。Ig1、Ig2和Ig3序列同一性较低,但具有相同的折叠方式且三维结构非常相似。已测量了(15)N纵向和横向弛豫率以及异核NOE,并随后通过轴对称Lipari-Szabo无模型形式进行分析,以表征这三个蛋白质模块中的快速(皮秒至纳秒)和慢速(微秒至毫秒)运动。我们发现,位于β链区域的残基的主链运动通常受到限制,而在转角和环中观察到柔韧性增加。在所有三个模块中,位于连接C链和D链的片段中的残基以及位于连接E链和F链的片段中的残基在微秒至毫秒时间尺度上显示出明显的化学交换。此外,一些化学交换贡献较小的残基似乎在β折叠片中形成连续区域,这表明这些运动可能是相关的。在NCAM Ig1和Ig2模块的同源结合位点中只有少数残基显示出柔韧性增加,这表明Ig1-Ig2介导的NCAM同源结合不依赖于相互作用模块的局部主链流动性。

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