Krupianskiĭ Iu F, Esin S V, Mikhaĭliuk M G, Vetrov O D, Eshchenko G V
Biofizika. 2004 May-Jun;49(3):401-12.
The angular dependencies of inelastic intensities of Rayleigh scattering of Moessbauer radiation were measured for myoglobin and lysozyme (in the hydration range h = 0.05-0.7). The data were fitted within the framework of model, when two types of intraglobular motions were taken into account: individual motions of small side-chain groups and cooperative motions of segments. The best agreement with the experiment at h > 0.05 was obtained when individual motions of small groups together with the cooperative motions of alpha-helices and beta-sheets for lysozyme, and alpha-helices for myoglobin were considered. At further hydration (h = 0.45), mean-square displacements (x2) of both types of motions strongly increase with the increase in hydration degree, while the motions with a large correlation radius (not less than macromolecule radius) remain nearly the same as for h = 0.05. The results of the study of the radial distribution function deduced by Fourier-transform from the diffuse x-ray measurements together with RSMR data allow one to conclude that the water during protein hydration competes with the intramolecular hydrogen bonds, loosens the protein and increases the internal dynamics. Concurrently, water arranges the ordering of macromolecule, which takes the native structure at h = 0.4-0.7. The analysis of auto and cross-correlation functions of bending fluctuations of alpha-helices in the large domain of lysozyme performed by molecular dynamics allows one to come to the final conclusion that it is the difference in the structural organization of myoglobin and lysozyme and not the presence of SS-bonds in lysozyme macromolecule that is responsible for different structural fluctuations in these proteins.
测量了肌红蛋白和溶菌酶(水合范围h = 0.05 - 0.7)的穆斯堡尔辐射瑞利散射非弹性强度的角度依赖性。当考虑两种类型的球内运动时,数据在模型框架内进行拟合:小侧链基团的个体运动和片段的协同运动。当考虑小基团的个体运动以及溶菌酶的α - 螺旋和β - 折叠的协同运动,以及肌红蛋白的α - 螺旋时,在h > 0.05时与实验得到了最佳拟合。在进一步水合(h = 0.45)时,两种类型运动的均方位移(x2)都随着水合程度的增加而强烈增加,而具有大相关半径(不小于大分子半径)的运动与h = 0.05时几乎相同。通过傅里叶变换从漫散射x射线测量以及RSMR数据推导的径向分布函数的研究结果使人们能够得出结论,蛋白质水合过程中的水与分子内氢键竞争,使蛋白质松弛并增加内部动力学。同时,水使大分子有序排列,在h = 0.4 - 0.7时大分子呈现天然结构。通过分子动力学对溶菌酶大结构域中α - 螺旋弯曲波动的自相关和互相关函数进行分析,最终得出结论,是肌红蛋白和溶菌酶结构组织的差异而非溶菌酶大分子中存在二硫键导致了这些蛋白质不同的结构波动。