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在非玻尔兹曼权重的扩展系综上实现的广义模拟回火。

Generalized simulated tempering realized on expanded ensembles of non-Boltzmann weights.

作者信息

Kim Jae Gil, Fukunishi Yoshifumi, Kidera Akinori, Nakamura Haruki

机构信息

Japan Biological Information Research Center, JBIC, Aomi 2-41-6, Koto-ku, Tokyo 135-0064, Japan.

出版信息

J Chem Phys. 2004 Sep 22;121(12):5590-601. doi: 10.1063/1.1786578.

Abstract

A generalized version of the simulated tempering operated in the expanded ensembles of non-Boltzmann weights has been proposed to mitigate a quasiergodicity problem occurring in simulations of rough energy landscapes. In contrast to conventional simulated tempering employing the Boltzmann weight, our method utilizes a parametrized, generalized distribution as a workhorse for stochastic exchanges of configurations and subensembles transitions, which allows a considerable enhancement for the rate of convergence of Monte Carlo and molecular dynamics simulations using delocalized weights. A feature of our method is that the exploration of the parameter space encouraging subensembles transitions is greatly accelerated using the dynamic update scheme for the weight via the average guide specific to the energy distribution. The performance and characteristic feature of our method have been validated in the liquid-solid transition of Lennard-Jones clusters and the conformational sampling of alanine dipeptide by taking two types of Tsallis [C. Tsallis, J. Stat. Phys. 52, 479 (1988)] expanded ensembles associated with different parametrization schemes.

摘要

有人提出在非玻尔兹曼权重的扩展系综中运行的模拟回火的广义版本,以缓解在粗糙能量景观模拟中出现的准遍历性问题。与采用玻尔兹曼权重的传统模拟回火不同,我们的方法利用参数化的广义分布作为配置随机交换和子系综转变(subensembles transitions)的主力,这使得使用离域权重的蒙特卡罗和分子动力学模拟的收敛速率有相当大的提高。我们方法的一个特点是,通过特定于能量分布的平均引导对权重进行动态更新,大大加快了鼓励子系综转变的参数空间探索。通过采用与不同参数化方案相关的两种类型的Tsallis [C. Tsallis, J. Stat. Phys. 52, 479 (1988)] 扩展系综,我们方法的性能和特征在 Lennard-Jones 团簇的液-固转变和丙氨酸二肽的构象采样中得到了验证。

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