Karlsson Eva Nordberg, Hachem Maher Abou, Ramchuran Santosh, Costa Hugo, Holst Olle, Fex Svenningsen Åsa, Hreggvidsson Gudmundur O
Department Biotechnology, Center for Chemistry and Chemical engineering, Lund University, P.O.Box 124, SE-221 00 Lund, Sweden.
FEMS Microbiol Lett. 2004 Dec 15;241(2):233-42. doi: 10.1016/j.femsle.2004.10.026.
Until recently, the function of the fifth domain of the thermostable modular xylanase Xyn10A from Rhodothermus marinus was unresolved. A putative homologue to this domain was however identified in a mannanase (Man26A) from the same microorganism which raised questions regarding a common function. An extensive search of all accessible data-bases as well as the partially sequenced genomes of R. marinus and Cytophaga hutchinsonii showed that homologues of this domain were encoded by multiple genes in microorganisms in the phylum Bacteroidetes. Moreover, the domain occurred invariably at the C-termini of proteins that were predominantly extra-cellular/cell attached. A primary structure motif of three conserved regions including structurally important glycines and a proline was also identified suggesting a conserved 3D fold. This bioinformatic evidence suggested a possible role of this domain in mediating cell attachment. To confirm this theory, R. marinus was grown, and activity assays showed that the major part of the xylanase activity was connected to whole cells. Moreover, immunocytochemical detection using a Xyn10A-specific antibody proved presence of Xyn10A on the R. marinus cell surface. In the light of this, a revision of experimental data present on both Xyn10A and Man26A was performed, and the results all indicate a cell-anchoring role of the domain, suggesting that this domain represents a novel type of module that mediates cell attachment in proteins originating from members of the phylum Bacteroidetes.
直到最近,来自海栖热袍菌的耐热模块化木聚糖酶Xyn10A的第五个结构域的功能仍未明确。然而,在来自同一微生物的一种甘露聚糖酶(Man26A)中发现了与该结构域的一个假定同源物,这引发了关于其共同功能的疑问。对所有可获取的数据库以及海栖热袍菌和哈氏噬纤维菌的部分测序基因组进行广泛搜索后发现,拟杆菌门中的微生物的多个基因编码了该结构域的同源物。此外,该结构域总是出现在主要位于细胞外/附着于细胞的蛋白质的C末端。还鉴定出了一个由三个保守区域组成的一级结构基序,其中包括具有重要结构意义的甘氨酸和一个脯氨酸,这表明存在保守的三维折叠。这一生物信息学证据表明该结构域可能在介导细胞附着中发挥作用。为了证实这一理论,培养了海栖热袍菌,活性测定表明木聚糖酶活性的主要部分与全细胞相关。此外,使用Xyn10A特异性抗体进行的免疫细胞化学检测证明了Xyn10A存在于海栖热袍菌的细胞表面。鉴于此,对Xyn10A和Man26A的现有实验数据进行了修订,结果均表明该结构域具有细胞锚定作用,这表明该结构域代表了一种新型模块,可介导来自拟杆菌门成员的蛋白质中的细胞附着。