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两种RNA聚合酶的故事:噬菌体Xp10的转录谱分析与基因表达策略

The tale of two RNA polymerases: transcription profiling and gene expression strategy of bacteriophage Xp10.

作者信息

Semenova Ekaterina, Djordjevic Marko, Shraiman Boris, Severinov Konstantin

机构信息

Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA.

出版信息

Mol Microbiol. 2005 Feb;55(3):764-77. doi: 10.1111/j.1365-2958.2004.04442.x.

Abstract

Bacteriophage Xp10 infects rice pathogen Xanthomonas oryzae. Xp10 encodes its own single-subunit RNA polymerase (RNAP), similar to that found in phages of the T7 family. On the other hand, most of Xp10 genes are organized in a manner typical of lambdoid phages that are known to rely only on host RNAP for their development. To better understand the temporal pattern of viral transcription during Xp10 development, we performed global transcription profiling, primer extension, chemical kinetic modelling and bioinformatic analyses of Xp10 gene expression. Our results indicate that true to its mosaic nature, Xp10 relies on both host and viral RNAPs for expression of genes coding for virion components and host lysis. The joint transcription of the same set of genes by two types of RNA polymerases is unprecedented for a bacteriophage. Curiously, such a situation is realized in chloroplasts.

摘要

噬菌体Xp10感染水稻病原菌稻黄单胞菌。Xp10编码其自身的单亚基RNA聚合酶(RNAP),类似于在T7家族噬菌体中发现的那种。另一方面,Xp10的大多数基因是以典型的λ样噬菌体的方式组织的,已知这类噬菌体在其发育过程中仅依赖宿主RNAP。为了更好地理解Xp10发育过程中病毒转录的时间模式,我们对Xp10基因表达进行了全局转录谱分析、引物延伸、化学动力学建模和生物信息学分析。我们的结果表明,正如其镶嵌性质所示,Xp10在表达编码病毒体成分和宿主裂解的基因时既依赖宿主RNAP,也依赖病毒RNAP。同一组基因由两种类型的RNA聚合酶进行联合转录,这在噬菌体中是前所未有的。奇怪的是,叶绿体中也存在这种情况。

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