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大分子拥挤诱导的蛋白质自缔合:通过磁弛豫色散进行的定量分析

Protein self-association induced by macromolecular crowding: a quantitative analysis by magnetic relaxation dispersion.

作者信息

Snoussi Karim, Halle Bertil

机构信息

Department of Biophysical Chemistry, Lund University, SE-22100 Lund, Sweden.

出版信息

Biophys J. 2005 Apr;88(4):2855-66. doi: 10.1529/biophysj.104.055871. Epub 2005 Jan 21.

Abstract

In the presence of high concentrations of inert macromolecules, the self-association of proteins is strongly enhanced through an entropic, excluded-volume effect variously called macromolecular crowding or depletion attraction. Despite the predicted large magnitude of this universal effect and its far-reaching biological implications, few experimental studies of macromolecular crowding have been reported. Here, we introduce a powerful new technique, fast field-cycling magnetic relaxation dispersion, for investigating crowding effects on protein self-association equilibria. By recording the solvent proton spin relaxation rate over a wide range of magnetic field strengths, we determine the populations of coexisting monomers and decamers of bovine pancreatic trypsin inhibitor in the presence of dextran up to a macromolecular volume fraction of 27%. Already at a dextran volume fraction of 14%, we find a 30-fold increase of the decamer population and 510(5)-fold increase of the association constant. The analysis of these results, in terms of a statistical-mechanical model that incorporates polymer flexibility as well as the excluded volume of the protein, shows that the dramatic enhancement of bovine pancreatic trypsin inhibitor self-association can be quantitatively rationalized in terms of hard repulsive interactions.

摘要

在高浓度惰性大分子存在的情况下,蛋白质的自缔合通过一种熵效应——排除体积效应,被显著增强,这种效应也被称为大分子拥挤效应或排空吸引作用。尽管预测这种普遍效应的幅度很大且具有深远的生物学意义,但关于大分子拥挤效应的实验研究报道却很少。在此,我们引入了一种强大的新技术——快速场循环磁共振弛豫色散技术,用于研究拥挤效应如何影响蛋白质的自缔合平衡。通过在很宽的磁场强度范围内记录溶剂质子自旋弛豫率,我们测定了在存在葡聚糖的情况下,牛胰蛋白酶抑制剂共存单体和十聚体的数量,葡聚糖的大分子体积分数最高可达27%。仅在葡聚糖体积分数为14%时,我们就发现十聚体数量增加了30倍,缔合常数增加了5×10⁵倍。根据一个统计力学模型对这些结果进行分析,该模型考虑了聚合物的柔韧性以及蛋白质的排除体积,结果表明,牛胰蛋白酶抑制剂自缔合的显著增强可以通过硬排斥相互作用进行定量解释。

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