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综合信息学与分子方法在1型糖尿病研究中的力量。

The power of an integrated informatic and molecular approach to type 1 diabetes research.

作者信息

Petrovsky Nikolai, Silva Diego

机构信息

Director, Diabetes and Endocrinology, Flinders Medical Centre, Bedford Park, South Australia, Australia.

出版信息

Ann N Y Acad Sci. 2004 Dec;1037:216-24. doi: 10.1196/annals.1337.035.

Abstract

Recent years have witnessed an explosive growth in available biological data. This includes a tremendous quantity of sequence data (e.g., biological structures, genetic and physical maps, pathways) generated by genome and transcriptome projects focused on humans, mice, and a multitude of other species. Diabetes research stands to greatly benefit from this data, which is distributed across public and private databases and the scientific literature. The increasing quantity and complexity of this biological data necessitates use of novel bioinformatics strategies for its efficient retrieval, analysis, and interpretation. Bioinformatic capability is becoming increasingly indispensable for fast and comprehensive analysis of biological data by diabetes researchers. There is great potential for diabetes scientists and clinicians to take advantage of recent bioinformatics and knowledge discovery developments to radically transform and advance this field of research. This paper will review advances in the field of bioinformatics relevant to diabetes research and preview a new specialty diabetes database, Diabetaeta, that we are creating to serve as a central bioinformatic portal for type 1 diabetes research, as well as serving as a public repository for beta cell gene and protein expression data.

摘要

近年来,可用的生物学数据呈爆炸式增长。这包括由专注于人类、小鼠和众多其他物种的基因组和转录组项目生成的大量序列数据(例如,生物结构、遗传和物理图谱、通路)。糖尿病研究有望从这些分布在公共和私人数据库以及科学文献中的数据中大大受益。这种生物学数据数量的不断增加和复杂性的不断提高,需要使用新颖的生物信息学策略来对其进行高效检索、分析和解读。对于糖尿病研究人员而言,生物信息学能力对于快速全面地分析生物学数据正变得越来越不可或缺。糖尿病科学家和临床医生极有可能利用近期生物信息学和知识发现的进展,从根本上变革和推进这一研究领域。本文将回顾与糖尿病研究相关的生物信息学领域的进展,并预览一个新的糖尿病专业数据库Diabetaeta,我们正在创建该数据库,以作为1型糖尿病研究的核心生物信息学门户,并作为β细胞基因和蛋白质表达数据的公共存储库。

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