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海洋深处见证了遗传密码的起源。

The ocean abysses witnessed the origin of the genetic code.

作者信息

Di Giulio Massimo

机构信息

Institute of Genetics and Biophysics 'Adriano Buzzati Traverso', CNR, Via G. Marconi 10, 80125 Naples, Napoli, Italy.

出版信息

Gene. 2005 Feb 14;346:7-12. doi: 10.1016/j.gene.2004.07.045. Epub 2004 Dec 31.

Abstract

The comparison of proteins from a non-barophilous and a barophilous organism makes it possible to define the barophily ranks of amino acids. The correlation of these ranks with the number of codons attributed to amino acids in the genetic code, together with another straightforward argument based on an optimisation percentage of a barophily index (BI) (easily defined by barophily ranks) which can be associated to the genetic code table, suggest that the genetic code originated under high hydrostatic pressure. Moreover, as the BI value can be calculated for the sequence of any protein, it also makes it possible to define the BI for the genetic code if the number of codons attributed to the amino acids in the code is assumed to be the frequency with which the amino acids appeared in ancestral proteins. Finally, sampling the BI variable between many non-barophile organisms and from many proteins of a single non-barophile organism leads to the conclusion that the BI value of the genetic code is not typical of these organisms. Whereas, since the genetic code BI value is statistically higher than that of these non-barophile organisms, it supports the hypothesis that genetic code structuring took place under high hydrostatic pressure.

摘要

对来自非嗜压生物和嗜压生物的蛋白质进行比较,有助于确定氨基酸的嗜压等级。这些等级与遗传密码中赋予氨基酸的密码子数量之间的相关性,再加上另一个基于嗜压指数(BI)(可通过嗜压等级轻松定义)优化百分比的直接论据,该论据可与遗传密码表相关联,这表明遗传密码起源于高静水压力环境。此外,由于可以为任何蛋白质序列计算BI值,如果假设密码中赋予氨基酸的密码子数量就是氨基酸在祖先蛋白质中出现的频率,那么也就有可能为遗传密码定义BI。最后,对许多非嗜压生物以及单个非嗜压生物的多种蛋白质的BI变量进行采样后得出结论,遗传密码的BI值并非这些生物所特有的。然而,由于遗传密码的BI值在统计学上高于这些非嗜压生物的BI值,这支持了遗传密码结构形成于高静水压力环境这一假说。

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