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海洋噬菌体基因组学:我们学到了什么?

Marine phage genomics: what have we learned?

作者信息

Paul John H, Sullivan Matthew B

机构信息

College of Marine Science, University of South Florida, St Petersburg, Florida 33701, USA.

出版信息

Curr Opin Biotechnol. 2005 Jun;16(3):299-307. doi: 10.1016/j.copbio.2005.03.007.

Abstract

Marine phages are the most abundant and diverse form of life on the planet, and their genomes have been described as the largest untapped reservoir of genomic information. To date, however, the complete genome sequences of only 17 marine phage are known. Nevertheless, these genomes have revealed some interesting features, including the presence of photosynthetic genes in cyanophage and common patterns of genomic organization. Intriguing findings are also being made from studies of the uncultivated marine viral community genome ('metavirome'). The greatest challenge in interpreting the biology of these phages, and for making comparisons with their terrestrial counterparts, is the high proportion of unidentifiable open reading frames (approximately 60%). Future studies are likely to focus on sequencing more marine phage genomes from disparate hosts and diverse environments and on further basic studies of the biology of existing marine phages.

摘要

海洋噬菌体是地球上数量最为丰富且种类最为多样的生命形式,其基因组被认为是最大的尚未开发的基因组信息库。然而,迄今为止,仅知晓17种海洋噬菌体的完整基因组序列。尽管如此,这些基因组已揭示出一些有趣的特征,包括蓝藻噬菌体中光合基因的存在以及基因组组织的常见模式。对未培养的海洋病毒群落基因组(“宏病毒组”)的研究也有引人关注的发现。解读这些噬菌体生物学特性以及与陆生噬菌体进行比较时面临的最大挑战,是高比例无法识别的开放阅读框(约60%)。未来的研究可能会集中于对来自不同宿主和多样环境的更多海洋噬菌体基因组进行测序,以及对现有海洋噬菌体生物学特性开展进一步的基础研究。

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