基于生物语言学方法的功能蛋白质组学。词元提供了对基因相似性的敏感描述。 - Suppr

Functional proteomics with biolinguistic methods. n-grams deliver sensitive portrayals of gene similarity.

作者信息

Singh Gautam B, Singh Harkirat

机构信息

Center for Bioinformatics, Department of Computer Science and Engineering, Oakland University, Rochester, MI 48309, USA.

出版信息

IEEE Eng Med Biol Mag. 2005 May-Jun;24(3):73-80. doi: 10.1109/memb.2005.1436463.

DOI:10.1109/memb.2005.1436463

PMID:15971844

Abstract

摘要

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Functional proteomics with biolinguistic methods. n-grams deliver sensitive portrayals of gene similarity.

IEEE Eng Med Biol Mag. 2005 May-Jun;24(3):73-80. doi: 10.1109/memb.2005.1436463.

Do current sequence analysis algorithms disclose multifunctional (moonlighting) proteins?

Bioinformatics. 2003 May 1;19(7):895-6. doi: 10.1093/bioinformatics/btg111.

The limits of protein sequence comparison?

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Protein refinement: a new challenge for CASP in its 10th anniversary.

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Quantitative analysis of proteomics using data mining. An automated system for constructing assays quickly and precisely.

IEEE Eng Med Biol Mag. 2005 May-Jun;24(3):67-72. doi: 10.1109/memb.2005.1436462.

Protein function from sequence and structure data.

Appl Bioinformatics. 2003;2(1):3-12.

pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry.

Bioinformatics. 2005 Jul 1;21(13):3049-50. doi: 10.1093/bioinformatics/bti439. Epub 2005 Apr 7.

MagicMatch--cross-referencing sequence identifiers across databases.

Bioinformatics. 2005 Aug 15;21(16):3429-30. doi: 10.1093/bioinformatics/bti548. Epub 2005 Jun 16.

Data analysis--the Achilles heel of proteomics.

Nat Biotechnol. 2003 Mar;21(3):221-2. doi: 10.1038/nbt0303-221.

J Biomed Inform. 2008 Feb;41(1):65-81. doi: 10.1016/j.jbi.2007.05.010. Epub 2007 Jun 27.

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Functional proteomics with biolinguistic methods. n-grams deliver sensitive portrayals of gene similarity.

IEEE Eng Med Biol Mag. 2005 May-Jun;24(3):73-80. doi: 10.1109/memb.2005.1436463.

Do current sequence analysis algorithms disclose multifunctional (moonlighting) proteins?

Bioinformatics. 2003 May 1;19(7):895-6. doi: 10.1093/bioinformatics/btg111.

The limits of protein sequence comparison?

Curr Opin Struct Biol. 2005 Jun;15(3):254-60. doi: 10.1016/j.sbi.2005.05.005.

Protein refinement: a new challenge for CASP in its 10th anniversary.

Bioinformatics. 2005 Feb 1;21(3):277. doi: 10.1093/bioinformatics/bti249. Epub 2005 Jan 12.

Quantitative analysis of proteomics using data mining. An automated system for constructing assays quickly and precisely.

IEEE Eng Med Biol Mag. 2005 May-Jun;24(3):67-72. doi: 10.1109/memb.2005.1436462.

Protein function from sequence and structure data.

Appl Bioinformatics. 2003;2(1):3-12.

pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry.

Bioinformatics. 2005 Jul 1;21(13):3049-50. doi: 10.1093/bioinformatics/bti439. Epub 2005 Apr 7.

MagicMatch--cross-referencing sequence identifiers across databases.

Bioinformatics. 2005 Aug 15;21(16):3429-30. doi: 10.1093/bioinformatics/bti548. Epub 2005 Jun 16.

Data analysis--the Achilles heel of proteomics.

Nat Biotechnol. 2003 Mar;21(3):221-2. doi: 10.1038/nbt0303-221.

J Biomed Inform. 2008 Feb;41(1):65-81. doi: 10.1016/j.jbi.2007.05.010. Epub 2007 Jun 27.

Functional proteomics with biolinguistic methods. n-grams deliver sensitive portrayals of gene similarity.

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