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啮齿动物和灵长类动物基因家族独立扩张后妊娠特异性糖蛋白(PSG)N结构域的保守性。

Conservation of pregnancy-specific glycoprotein (PSG) N domains following independent expansions of the gene families in rodents and primates.

作者信息

McLellan Andrew S, Zimmermann Wolfgang, Moore Tom

机构信息

Department of Biochemistry, Biosciences Institute, University College Cork, College Road, Cork, Ireland.

出版信息

BMC Evol Biol. 2005 Jun 29;5:39. doi: 10.1186/1471-2148-5-39.

Abstract

BACKGROUND

Rodent and primate pregnancy-specific glycoprotein (PSG) gene families have expanded independently from a common ancestor and are expressed virtually exclusively in placental trophoblasts. However, within each species, it is unknown whether multiple paralogs have been selected for diversification of function, or for increased dosage of monofunctional PSG. We analysed the evolution of the mouse PSG sequences, and compared them to rat, human and baboon PSGs to attempt to understand the evolution of this complex gene family.

RESULTS

Phylogenetic tree analyses indicate that the primate N domains and the rodent N1 domains exhibit a higher degree of conservation than that observed in a comparison of the mouse N1 and N2 domains, or mouse N1 and N3 domains. Compared to human and baboon PSG N domain exons, mouse and rat PSG N domain exons have undergone less sequence homogenisation. The high non-synonymous substitution rates observed in the CFG face of the mouse N1 domain, within a context of overall conservation, suggests divergence of function of mouse PSGs. The rat PSG family appears to have undergone less expansion than the mouse, exhibits lower divergence rates and increased sequence homogenisation in the CFG face of the N1 domain. In contrast to most primate PSG N domains, rodent PSG N1 domains do not contain an RGD tri-peptide motif, but do contain RGD-like sequences, which are not conserved in rodent N2 and N3 domains.

CONCLUSION

Relative conservation of primate N domains and rodent N1 domains suggests that, despite independent gene family expansions and structural diversification, mouse and human PSGs retain conserved functions. Human PSG gene family expansion and homogenisation suggests that evolution occurred in a concerted manner that maintains similar functions of PSGs, whilst increasing gene dosage of the family as a whole. In the mouse, gene family expansion, coupled with local diversification of the CFG face, suggests selection both for increased gene dosage and diversification of function. Partial conservation of RGD and RGD-like tri-peptides in primate and rodent N and N1 domains, respectively, supports a role for these motifs in PSG function.

摘要

背景

啮齿动物和灵长类动物的妊娠特异性糖蛋白(PSG)基因家族从共同祖先独立进化而来,几乎仅在胎盘滋养层细胞中表达。然而,在每个物种中,尚不清楚多个旁系同源基因是为功能多样化而被选择,还是为增加单功能PSG的剂量而被选择。我们分析了小鼠PSG序列的进化,并将它们与大鼠、人类和狒狒的PSG进行比较,试图了解这个复杂基因家族的进化。

结果

系统发育树分析表明,与小鼠N1和N2结构域或小鼠N1和N3结构域的比较相比,灵长类动物的N结构域和啮齿动物的N1结构域表现出更高程度的保守性。与人类和狒狒的PSG N结构域外显子相比,小鼠和大鼠的PSG N结构域外显子经历的序列同质化较少。在整体保守的背景下,小鼠N1结构域的CFG面观察到的高非同义替换率表明小鼠PSG功能存在差异。大鼠PSG家族似乎比小鼠经历的扩张更少,在N1结构域的CFG面表现出更低的差异率和更高的序列同质化。与大多数灵长类动物的PSG N结构域不同,啮齿动物的PSG N1结构域不包含RGD三肽基序,但确实包含RGD样序列,这些序列在啮齿动物的N2和N3结构域中不保守。

结论

灵长类动物N结构域和啮齿动物N1结构域的相对保守性表明,尽管基因家族独立扩张和结构多样化,但小鼠和人类的PSG保留了保守功能。人类PSG基因家族的扩张和同质化表明,进化以协调的方式发生,维持PSG的相似功能,同时增加整个家族的基因剂量。在小鼠中,基因家族的扩张,加上CFG面的局部多样化,表明选择既增加了基因剂量又实现了功能多样化。灵长类动物和啮齿动物的N和N1结构域中RGD和RGD样三肽的部分保守性支持了这些基序在PSG功能中的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab41/1185527/6ea3a9dee563/1471-2148-5-39-1.jpg

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