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P450terp和P450BM-3的血红素蛋白结构域的结晶及初步X射线衍射分析,这两种酶属于细胞色素P450超家族的两个不同类别。

Crystallization and preliminary x-ray diffraction analysis of P450terp and the hemoprotein domain of P450BM-3, enzymes belonging to two distinct classes of the cytochrome P450 superfamily.

作者信息

Boddupalli S S, Hasemann C A, Ravichandran K G, Lu J Y, Goldsmith E J, Deisenhofer J, Peterson J A

机构信息

Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas 75235-9038.

出版信息

Proc Natl Acad Sci U S A. 1992 Jun 15;89(12):5567-71. doi: 10.1073/pnas.89.12.5567.

Abstract

Cytochromes P450 are members of a superfamily of hemoproteins that are involved in the metabolism of various physiologic and xenobiotic organic compounds. This superfamily of proteins can be divided into two classes based on the electron donor proximal to the P450: an iron-sulfur protein for class I P450s or a flavoprotein for class II. The only known tertiary structure of any of the cytochromes P450 is that of P450cam, a class I soluble enzyme isolated from Pseudomonas putida (product of the CYP101 gene). To understand the details of the structure-function relationships within and between the two classes, structural studies on additional cytochromes P450 are crucial. We report here characterization of the crystal forms of two soluble, bacterial enzymes: cytochrome P450terp [class I enzyme from a Pseudomonas species (product of CYP108 gene)] and the hemoprotein domain of cytochrome P450BM-3 [class II enzyme from Bacillus megaterium (product of the CYP102 gene)]. The crystals of cytochrome P450terp are hexagonal and belong to the space group P6(1)22 (or its enantiomorph, P6(5)22) with unit cell dimensions a = b = 68.9 A and c = 458.7 A. The crystals of the hemoprotein domain of cytochrome P450BM-3 are monoclinic and belong to the space group P2(1) with unit cell dimensions a = 59.4 A, b = 154.0 A, c = 62.2 A, and beta = 94.7 degrees. Diffraction data for the crystals of these two proteins were obtained to a resolution better than 2.2 A. Assuming the presence of two molecules in the asymmetric unit for the hemoprotein domain of P450BM-3 and one molecule for P450terp, the calculated values of Vm are 2.6 and 3.3 A3/Da, respectively.

摘要

细胞色素P450是血红蛋白超家族的成员,参与各种生理和外源性有机化合物的代谢。基于靠近P450的电子供体,该蛋白质超家族可分为两类:I类P450的铁硫蛋白或II类的黄素蛋白。细胞色素P450中任何一种已知的三级结构是P450cam的结构,它是一种从恶臭假单胞菌中分离出的I类可溶性酶(CYP101基因的产物)。为了了解这两类之间以及内部结构-功能关系的细节,对其他细胞色素P450进行结构研究至关重要。我们在此报告两种可溶性细菌酶晶体形式的表征:细胞色素P450terp [来自假单胞菌属的I类酶(CYP108基因的产物)]和细胞色素P450BM-3的血红蛋白结构域[来自巨大芽孢杆菌的II类酶(CYP102基因的产物)]。细胞色素P450terp的晶体为六方晶系,属于空间群P6(1)22(或其对映体P6(5)22),晶胞参数a = b = 68.9 Å,c = 458.7 Å。细胞色素P450BM-3血红蛋白结构域的晶体为单斜晶系,属于空间群P2(1),晶胞参数a = 59.4 Å,b = 154.0 Å,c = 62.2 Å,β = 94.7°。获得了这两种蛋白质晶体的衍射数据,分辨率优于2.2 Å。假设P450BM-3血红蛋白结构域的不对称单位中有两个分子,P450terp中有一个分子,则计算得到的Vm值分别为2.6和3.3 Å3/Da。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf91/49333/ddf7178b9141/pnas01086-0377-a.jpg

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