Medini Duccio, Donati Claudio, Tettelin Hervé, Masignani Vega, Rappuoli Rino
Immunobiological Research Institute of Siena (IRIS), Chiron Vaccines, via Fiorentina 1, 53100 Siena, Italy.
Curr Opin Genet Dev. 2005 Dec;15(6):589-94. doi: 10.1016/j.gde.2005.09.006. Epub 2005 Sep 26.
A decade after the beginning of the genomic era, the question of how genomics can describe a bacterial species has not been fully addressed. Experimental data have shown that in some species new genes are discovered even after sequencing the genomes of several strains. Mathematical modeling predicts that new genes will be discovered even after sequencing hundreds of genomes per species. Therefore, a bacterial species can be described by its pan-genome, which is composed of a "core genome" containing genes present in all strains, and a "dispensable genome" containing genes present in two or more strains and genes unique to single strains. Given that the number of unique genes is vast, the pan-genome of a bacterial species might be orders of magnitude larger than any single genome.
基因组时代开启十年后,基因组学如何描述一个细菌物种的问题仍未得到充分解决。实验数据表明,在某些物种中,即使对多个菌株的基因组进行了测序,仍能发现新基因。数学模型预测,即使对每个物种的数百个基因组进行测序,仍会发现新基因。因此,一个细菌物种可以用其泛基因组来描述,泛基因组由一个“核心基因组”(包含所有菌株中都存在的基因)和一个“可 dispensable 基因组”(包含两个或更多菌株中存在的基因以及单个菌株特有的基因)组成。鉴于独特基因的数量巨大,一个细菌物种的泛基因组可能比任何单个基因组大几个数量级。 (注:dispensable 在这里可能是专业术语,暂时保留英文未翻译,因为不确定准确的中文表述,你可根据实际专业内容进行准确翻译)