Katashkina Zh I, Skorokhodova A Iu, Zimenkov D V, Gulevich A Iu, Minaeva N I, Doroshenko V G, Biriukova I V, Mashko S V
Mol Biol (Mosk). 2005 Sep-Oct;39(5):823-31.
The new method of construction of the set of E. coli clones, differing in the promoter strength upstream the gene of interest, has been developed and tested using native E. coli MG 1655 lacZ gene as the reporter. This method includes the construction of the promoter-carrying DNA fragment obtained by PCR with consensus P(tac) as a template and the primers that lead to randomization of 4 central nucleotides in the promoter "-35"-region, linking the obtained fragments with the selective marker (Cm(R)) followed by Red-driven integration of the resulted DNA fragments directly in E. coli MG1655 chromosome instead the native lacI-gene and promoter/operator region of lac-operon. Due to direct determination of LacZ-activity in the independently obtained clones-integrants, we have found 14 new promoters (from 44 = 256 possible variants) that differ in their strength up to 100 fold (LacZ-activity in the corresponding strains smoothly varies from 10(2) for the weakest tested promoter up to 10(4) Miller U detected for the initial P(tac)). Sequencing of obtained promoters revealed that randomization of three positions in the "-35"-region is sufficient to obtain representative promoter library that would decrease the total number of potential promoter variants from 256 up to 64. It seems probable that exploiting of the developed method leading to one-step construction the library of clones with varied expression of gene/operon of interest could be useful tool in the modem metabolic engineering for optimization of genes expression.
已开发出一种构建大肠杆菌克隆集的新方法,该克隆集在目标基因上游的启动子强度方面存在差异,并使用天然大肠杆菌MG 1655 lacZ基因作为报告基因进行了测试。该方法包括以共有P(tac)为模板通过PCR构建携带启动子的DNA片段,以及使用能使启动子“-35”区域的4个中心核苷酸随机化的引物,将获得的片段与选择标记(Cm(R))连接,随后通过Red介导将所得DNA片段直接整合到大肠杆菌MG1655染色体中,取代天然的lacI基因和lac操纵子的启动子/操纵子区域。由于直接测定了独立获得的克隆整合体中的LacZ活性,我们发现了14个新的启动子(来自44 = 256种可能的变体),其强度差异高达100倍(相应菌株中的LacZ活性从最弱测试启动子的10(2)平稳变化到初始P(tac)检测到的10(4) Miller单位)。对获得的启动子进行测序表明,“-35”区域中三个位置的随机化足以获得代表性的启动子文库,这将使潜在启动子变体的总数从256减少到64。利用所开发的方法一步构建具有不同目标基因/操纵子表达的克隆文库,似乎可能成为现代代谢工程中优化基因表达的有用工具。