Target site localization by site-specific, DNA-binding proteins.
作者信息
Widom Jonathan
机构信息
Department of Biochemistry, Molecular Biology, and Cell Biology, Northwestern University, 2205 Tech Drive, Evanston, IL 60208-3500, USA.
出版信息
Proc Natl Acad Sci U S A. 2005 Nov 22;102(47):16909-10. doi: 10.1073/pnas.0508686102. Epub 2005 Nov 15.
Abstract
摘要
相似文献
1
Target site localization by site-specific, DNA-binding proteins.
Proc Natl Acad Sci U S A. 2005 Nov 22;102(47):16909-10. doi: 10.1073/pnas.0508686102. Epub 2005 Nov 15.
2
Homing in on intron-encoded endonucleases.
Nat Struct Biol. 1997 Jun;4(6):423-4. doi: 10.1038/nsb0697-423.
3
Common patterns in type II restriction enzyme binding sites.
Nucleic Acids Res. 2005 May 11;33(8):2726-33. doi: 10.1093/nar/gki575. Print 2005.
4
The DNA binding domain of a papillomavirus E2 protein programs a chimeric nuclease to cleave integrated human papillomavirus DNA in HeLa cervical carcinoma cells.
J Virol. 2007 Jun;81(12):6254-64. doi: 10.1128/JVI.00232-07. Epub 2007 Mar 28.
5
Structure of NaeI-DNA complex reveals dual-mode DNA recognition and complete dimer rearrangement.
Nat Struct Biol. 2001 Aug;8(8):665-9. doi: 10.1038/90366.
6
Structure of free BglII reveals an unprecedented scissor-like motion for opening an endonuclease.
Nat Struct Biol. 2001 Feb;8(2):126-30. doi: 10.1038/84111.
7
Long-range identification of hepatocyte nuclear factor-3 (FoxA) high and low-affinity binding sites with a chimeric nuclease.
J Mol Biol. 2001 Jul 13;310(3):523-35. doi: 10.1006/jmbi.2001.4788.
8
FokI requires two specific DNA sites for cleavage.
J Mol Biol. 2001 May 25;309(1):69-78. doi: 10.1006/jmbi.2001.4635.
9
Picture story. Restricted movement.
Nat Struct Biol. 2000 Aug;7(8):623. doi: 10.1038/77909.
10
BglII and MunI: what a difference a base makes.
Curr Opin Struct Biol. 2001 Feb;11(1):14-8. doi: 10.1016/s0959-440x(00)00174-3.
引用本文的文献
1
Investigating the Influence of Magnesium Ions on p53-DNA Binding Using Atomic Force Microscopy.
Int J Mol Sci. 2017 Jul 21;18(7):1585. doi: 10.3390/ijms18071585.
2
Human Lin28 Forms a High-Affinity 1:1 Complex with the 106~363 Cluster miRNA miR-363.
Biochemistry. 2016 Sep 13;55(36):5021-7. doi: 10.1021/acs.biochem.6b00682. Epub 2016 Sep 1.
3
Twist-open mechanism of DNA damage recognition by the Rad4/XPC nucleotide excision repair complex.
Proc Natl Acad Sci U S A. 2016 Apr 19;113(16):E2296-305. doi: 10.1073/pnas.1514666113. Epub 2016 Mar 31.
4
DNA target sequence identification mechanism for dimer-active protein complexes.
Nucleic Acids Res. 2013 Feb 1;41(4):2416-27. doi: 10.1093/nar/gks1345. Epub 2012 Dec 28.
5
Reaction-diffusion systems in intracellular molecular transport and control.
Angew Chem Int Ed Engl. 2010 Jun 7;49(25):4170-98. doi: 10.1002/anie.200905513.
6
Structure and function of photolyase and in vivo enzymology: 50th anniversary.
J Biol Chem. 2008 Nov 21;283(47):32153-7. doi: 10.1074/jbc.R800052200. Epub 2008 Aug 4.
7
Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.
Nucleic Acids Res. 2008 Jul;36(12):4118-27. doi: 10.1093/nar/gkn376. Epub 2008 Jun 10.
8
Tumor suppressor p53 slides on DNA with low friction and high stability.
Biophys J. 2008 Jul;95(1):L01-3. doi: 10.1529/biophysj.108.134122. Epub 2008 Apr 18.
9
How gene order is influenced by the biophysics of transcription regulation.
Proc Natl Acad Sci U S A. 2007 Aug 28;104(35):13948-53. doi: 10.1073/pnas.0700672104. Epub 2007 Aug 20.
10
General transfer matrix formalism to calculate DNA-protein-drug binding in gene regulation: application to OR operator of phage lambda.
Nucleic Acids Res. 2007;35(11):e80. doi: 10.1093/nar/gkm268. Epub 2007 May 25.
本文引用的文献
1
Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA.
Proc Natl Acad Sci U S A. 2005 Nov 1;102(44):15883-8. doi: 10.1073/pnas.0505378102. Epub 2005 Oct 21.
2
Facilitated diffusion in chromatin lattices: mechanistic diversity and regulatory potential.
Mol Microbiol. 2005 Aug;57(4):889-99. doi: 10.1111/j.1365-2958.2005.04707.x.
3
Transition from nonspecific to specific DNA interactions along the substrate-recognition pathway of dam methyltransferase.
Cell. 2005 May 6;121(3):349-61. doi: 10.1016/j.cell.2005.02.021.
4
Transcriptional regulation by the numbers: applications.
Curr Opin Genet Dev. 2005 Apr;15(2):125-35. doi: 10.1016/j.gde.2005.02.006.
5
Transcriptional regulation by the numbers: models.
Curr Opin Genet Dev. 2005 Apr;15(2):116-24. doi: 10.1016/j.gde.2005.02.007.
6
Gene regulatory networks for development.
Proc Natl Acad Sci U S A. 2005 Apr 5;102(14):4936-42. doi: 10.1073/pnas.0408031102. Epub 2005 Mar 23.
7
Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential.
Biophys J. 2004 Dec;87(6):4021-35. doi: 10.1529/biophysj.104.050765. Epub 2004 Oct 1.
8
Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes.
Science. 2004 Jul 16;305(5682):386-9. doi: 10.1126/science.1097064.
9
How do site-specific DNA-binding proteins find their targets?
Nucleic Acids Res. 2004 Jun 3;32(10):3040-52. doi: 10.1093/nar/gkh624. Print 2004.
10
Spontaneous sharp bending of double-stranded DNA.
Mol Cell. 2004 May 7;14(3):355-62. doi: 10.1016/s1097-2765(04)00210-2.
Zotero 插件