Iranfar Negin, Fuller Danny, Loomis William F
Cell and Developmental Biology, Division of Biological Sciences, University of California San Diego, La Jolla, CA 92093, USA.
Dev Biol. 2006 Feb 15;290(2):460-9. doi: 10.1016/j.ydbio.2005.11.035. Epub 2006 Jan 4.
Expression profiles of developmental genes in Dictyostelium were determined on microarrays during development of wild type cells and mutant cells lacking either the DNA binding protein GBF or the signaling protein LagC. We found that the mutant strains developed in suspension with added cAMP expressed the pulse-induced and early adenylyl cyclase (ACA)-dependent genes, but not the later ACA-dependent, post-aggregation genes. Since expression of lagC itself is dependent on GBF, expression of the post-aggregation genes might be controlled only by signaling from LagC. However, expression of lagC in a GBF-independent manner in a gbfA- null strain did not result in expression of the post-aggregation genes. Since GBF is necessary for accumulation of LagC and both the DNA binding protein and the LagC signal transduction pathway are necessary for expression of post-aggregation genes, GBF and LagC form a feed-forward loop. Such network architecture is a common motif in diverse organisms and can act as a filter for noisy inputs. Breaking the feed-forward loop by expressing lagC in a GBF-independent manner in a gbfA+ strain does not significantly affect the patterns of gene expression for cells developed in suspension with added cAMP, but results in a significant delay at the mound stage and asynchronous development on solid supports. This feed-forward loop can integrate temporal information with morphological signals to ensure that post-aggregation genes are only expressed after cell contacts have been made.
在野生型细胞以及缺乏DNA结合蛋白GBF或信号蛋白LagC的突变细胞发育过程中,利用微阵列技术测定了盘基网柄菌发育基因的表达谱。我们发现,在添加了cAMP的悬浮液中发育的突变菌株表达脉冲诱导型和早期依赖腺苷酸环化酶(ACA)的基因,但不表达后期依赖ACA的聚集后基因。由于lagC自身的表达依赖于GBF,因此聚集后基因的表达可能仅受LagC信号的控制。然而,在gbfA基因缺失菌株中以不依赖GBF的方式表达lagC,并未导致聚集后基因的表达。由于GBF是LagC积累所必需的,并且DNA结合蛋白和LagC信号转导途径对于聚集后基因的表达都是必需的,因此GBF和LagC形成了一个前馈环。这种网络结构是多种生物体中的常见基序,可作为嘈杂输入的过滤器。在gbfA+菌株中以不依赖GBF的方式表达lagC来打破前馈环,对在添加了cAMP的悬浮液中发育的细胞的基因表达模式没有显著影响,但会导致丘状体阶段出现显著延迟以及在固体支持物上发育不同步。这个前馈环可以将时间信息与形态信号整合起来,以确保聚集后基因仅在细胞发生接触后才表达。