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基于卡-帕里尼罗分子动力学的羟基自由基溶剂化结构

Solvation structure of hydroxyl radical by Car-Parrinello molecular dynamics.

作者信息

Khalack Julia M, Lyubartsev Alexander P

机构信息

Division of Physical Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden.

出版信息

J Phys Chem A. 2005 Jan 20;109(2):378-86. doi: 10.1021/jp0461807.

Abstract

Car-Parrinello molecular dynamics simulations of a hydroxyl radical in liquid water have been performed. Structural and dynamical properties of the solvated structure have been studied in details. The partial atom-atom radial distribution functions for the hydrated hydroxyl do not show drastic differences with the radial distribution functions for liquid water. The OH is found to be a more active hydrogen bond donor and acceptor than the water molecule, but the accepted hydrogen bonds are much weaker than for the hydroxide OH- ion. The first solvation shell of the OH is less structured than the water's one and contains a considerable fraction of water molecules that are not hydrogen bonded to the hydroxyl. Part of them are found to come closer to the solvated radical than the hydrogen bonded molecules do. The lifetime of the hydrogen bonds accepted by the hydroxyl is found to be shorter than the hydrogen bond lifetime in water. A hydrogen transfer between a water molecule and the OH radical has been observed, though it is a much rarer event than a proton transfer between water and an OH- ion. The velocity autocorrelation power spectrum of the hydroxyl hydrogen shows the properties both of the OH radical in clusters and of the OH- ion in liquid.

摘要

已对液态水中羟基自由基进行了Car-Parrinello分子动力学模拟。详细研究了溶剂化结构的结构和动力学性质。水合羟基的部分原子-原子径向分布函数与液态水的径向分布函数没有显著差异。发现OH是比水分子更活跃的氢键供体和受体,但接受的氢键比氢氧根离子OH-的氢键弱得多。OH的第一溶剂化层比水的溶剂化层结构更少,并且包含相当一部分未与羟基形成氢键的水分子。发现其中一部分比形成氢键的分子更靠近溶剂化自由基。发现羟基接受的氢键寿命比水中的氢键寿命短。观察到水分子与OH自由基之间的氢转移,尽管这比水与OH-离子之间的质子转移要罕见得多。羟基氢的速度自相关功率谱显示了团簇中OH自由基和液体中OH-离子的性质。

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