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气相中DNA碱基、碱基对及其互变异构体光学响应的含时密度泛函理论研究

A TDDFT study of the optical response of DNA bases, base pairs, and their tautomers in the gas phase.

作者信息

Tsolakidis Argyrios, Kaxiras Efthimios

机构信息

Department of Physics and Division of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA.

出版信息

J Phys Chem A. 2005 Mar 17;109(10):2373-80. doi: 10.1021/jp044729w.

Abstract

We present calculations of the optical response of the DNA bases and base pairs both in their normal and tautomeric forms in the gas phase, using time-dependent density functional theory (TDDFT). These calculations are performed in real time within the adiabatic approximation with a basis of local orbitals. Our results for the individual bases are in good agreement with experiment and computationally more demanding calculations of chemical accuracy. The optical response of base pairs indicates that the differences between normal and tautomeric forms in certain cases are significant enough to provide a means of identification.

摘要

我们使用含时密度泛函理论(TDDFT),给出了气相中DNA碱基及其碱基对在正常形式和互变异构形式下的光学响应计算结果。这些计算是在绝热近似下,以局域轨道为基组实时进行的。我们对单个碱基的计算结果与实验结果以及化学精度要求更高的计算结果吻合良好。碱基对的光学响应表明,在某些情况下,正常形式和互变异构形式之间的差异足够显著,足以提供一种识别方法。

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