Zhou Jin-Ming, Zhou Jun-Hong, Zhang Hua-Bei, Dong Xi-Cheng, Chen Min-Bo
Department of Computer Chemistry and Cheminformatics, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 354 Fenglin Lu, 200032 Shanghai, China.
Carbohydr Res. 2006 Sep 25;341(13):2224-32. doi: 10.1016/j.carres.2006.05.020. Epub 2006 Jul 12.
The effect of substitution by the fluorine atom at different positions of D-glucose was investigated by quantum chemical calculation of the low-energy conformers. These were obtained through the Random conformational search method. The geometries of conformers were optimized at the RHF/6-31(d) level, then reoptimization and vibrational analysis were performed at the B3LYP/6-31+G(d) level. Single-point energies were calculated at the B3LYP/6-311++G(2d,2p) level. The free energies of solvation in water were calculated utilizing the AM1-SM5.4 solvation model. For all substitution positions, the ring conformation does not change much, and the pyranoid 4C1 conformers are dominant, while variations in the substitution site result in different effects in the network of hydrogen bonds, anomeric effect, the solvation free energy, and the ratio of alpha- and beta-anomers.
通过对低能量构象异构体进行量子化学计算,研究了氟原子在D-葡萄糖不同位置取代的影响。这些构象异构体是通过随机构象搜索方法获得的。构象异构体的几何结构在RHF/6-31(d)水平上进行了优化,然后在B3LYP/6-31+G(d)水平上进行了重新优化和振动分析。单点能量在B3LYP/6-311++G(2d,2p)水平上进行了计算。利用AM1-SM5.4溶剂化模型计算了在水中的溶剂化自由能。对于所有取代位置,环构象变化不大,吡喃糖4C1构象异构体占主导,而取代位点的变化导致氢键网络、异头效应、溶剂化自由能以及α-和β-异头物比例产生不同影响。