Gervais Claire, Hertzsch Tino, Hulliger Jürg
Department of Chemistry and Biochemistry, University of Berne, Freiestrasse 3, CH-3012 Berne, Switzerland.
J Phys Chem B. 2005 Apr 28;109(16):7961-8. doi: 10.1021/jp044464l.
The mechanism of insertion of p-nitroaniline (PNA) and its diffusion behavior in channels of the hexagonal host structure of tris(o-phenylenedioxy)cyclotriphosphazene (TPP) was investigated by means of molecular modeling tools. Strong preferential sites in the bulk were found to be due to pi-pi and NH-pi interactions between PNA and channel walls of TPP. MD simulations showed that diffusion can be characterized by jumps from one site to the next, occurring mainly because of the dynamic flexibility of the host structure. Calculations of host-guest interactions between the TPP surface and PNA approaching the entrance of channels with its terminal H2N-first or O2N-first revealed that the H2N-first insertion is clearly preferred. Preferential insertion of PNA is found to be the reason for polar effects, observed experimentally. Because of a distinct guest-host recognition at the surface, guest-guest interactions were found to have a minor influence on polarity.
通过分子建模工具研究了对硝基苯胺(PNA)在三(邻苯二氧基)环三磷腈(TPP)六方主体结构通道中的插入机制及其扩散行为。发现主体中存在强优先位点是由于PNA与TPP通道壁之间的π-π和NH-π相互作用。分子动力学模拟表明,扩散的特征可以是从一个位点跳跃到下一个位点,这主要是由于主体结构的动态灵活性。对TPP表面与以其末端H2N先或O2N先接近通道入口的PNA之间的主客体相互作用的计算表明,显然更倾向于H2N先插入。发现PNA的优先插入是实验观察到的极性效应的原因。由于在表面存在明显的客体-主体识别,发现客体-客体相互作用对极性的影响较小。