蛋白质-聚合物溶液的结构与热力学:空间分布的疏水表面残基的影响

Structure and thermodynamics of protein-polymer solutions: effects of spatially distributed hydrophobic surface residues.

作者信息

Jönsson Malin, Linse Per

机构信息

Biochemistry and Physical Chemistry 1, Lund University, Box 124, SE-221 00 Lund, Sweden.

出版信息

J Phys Chem B. 2005 Aug 11;109(31):15107-17. doi: 10.1021/jp0451288.

Abstract

Protein-polymer association in solution driven by a short-range attraction has been investigated using a simple coarse-grain model solved by Monte Carlo simulations. The effect of the spatial distribution of the hydrophobic surface residues of the protein on the adsorption of weakly hydrophobic polymers at variable polymer concentration, polymer length, and polymer stiffness has been considered. Structural data on the adsorbed polymer layer and thermodynamic properties, such as the free energy, energy, and entropy, related to the protein-polymer interaction were calculated. It was found that a more heterogeneous distribution of the surface residues promotes adsorption and that this also applies for different polymer concentrations, polymer chain lengths, and polymer flexibilities. Furthermore, the polymer adsorption onto proteins with more homogeneous surface distributions displayed larger sensitivity to polymer properties such as chain length and flexibility. Finally, a simple relation between the adsorption probability and the change in the free energy was found and rationalized by a simple two-state adsorption model.

摘要

利用蒙特卡罗模拟求解的简单粗粒化模型,研究了由短程吸引力驱动的溶液中蛋白质-聚合物缔合。考虑了蛋白质疏水表面残基的空间分布对不同聚合物浓度、聚合物长度和聚合物刚度下弱疏水聚合物吸附的影响。计算了吸附聚合物层的结构数据以及与蛋白质-聚合物相互作用相关的热力学性质,如自由能、能量和熵。结果发现,表面残基分布更不均匀有利于吸附,这在不同聚合物浓度、聚合物链长和聚合物柔韧性情况下均适用。此外,聚合物在表面分布更均匀的蛋白质上的吸附对聚合物性质(如链长和柔韧性)表现出更大的敏感性。最后,发现了吸附概率与自由能变化之间的简单关系,并通过简单的二态吸附模型进行了合理化解释。

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