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水中巴基球的分子动力学模拟研究:C60的原子模型与粗粒度模型

A molecular dynamics simulation study of buckyballs in water: atomistic versus coarse-grained models of C60.

作者信息

Choudhury Niharendu

机构信息

Theoretical Chemistry Section, Bhabha Atomic Research Centre, Mumbai 400 085, India.

出版信息

J Chem Phys. 2006 Jul 21;125(3):34502. doi: 10.1063/1.2217442.

Abstract

A simple coarse-grained water-C(60) model potential is proposed to study the solvation behavior of C(60) in water. Extensive molecular dynamics simulations are performed to compare the hydration behavior of the coarse-grained C(60) with that of its atomistic counterpart. In the coarse-grained description, we model the C(60) as a spherical solute and its interaction with water is represented by a simple two-body central potential as obtained from a coarse graining of the interactions of a water molecule with all the atoms of the C(60). On the other hand, the atomistic model takes into account a discrete nature of all the atoms of C(60) explicitly. Molecular dynamics simulations are carried out in an isothermal-isobaric ensemble at normal temperature and pressure. Various spatial and orientational correlations of the water around the two model C(60)s are compared. The coarse-grained model is shown to reproduce the hydration behavior of the C(60) quite well. The simplicity and the computational economy of the coarse-grained model will allow for simulations of self-assembly processes of a much larger system over a longer period of time.

摘要

为研究C(60)在水中的溶剂化行为,提出了一种简单的粗粒度水-C(60)模型势。进行了大量分子动力学模拟,以比较粗粒度C(60)与其原子模型的水合行为。在粗粒度描述中,我们将C(60)建模为球形溶质,其与水的相互作用由一个简单的两体中心势表示,该势是通过对水分子与C(60)所有原子的相互作用进行粗粒度处理得到的。另一方面,原子模型明确考虑了C(60)所有原子的离散性质。在常温常压下的等温等压系综中进行分子动力学模拟。比较了两种模型C(60)周围水的各种空间和取向相关性。结果表明,粗粒度模型能很好地再现C(60)的水合行为。粗粒度模型的简单性和计算经济性将允许在更长时间内对更大系统的自组装过程进行模拟。

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