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催化性镁离子的证据及磷酸盐对大肠杆菌磷酸果糖激酶-2活性的影响:核糖激酶家族成员的调节特性

Evidence for a catalytic Mg2+ ion and effect of phosphate on the activity of Escherichia coli phosphofructokinase-2: regulatory properties of a ribokinase family member.

作者信息

Parducci Rafael E, Cabrera Ricardo, Baez Mauricio, Guixé Victoria

机构信息

Departamento de Biología, Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, Chile.

出版信息

Biochemistry. 2006 Aug 1;45(30):9291-9. doi: 10.1021/bi060026o.

Abstract

Phosphofructokinase-2 (Pfk-2) from Escherichia coli belongs to the ribokinase family of sugar kinases. One of the signatures observed in amino acid sequences from the ribokinase familiy members is the NXXE motif, which locates at the active site in the ribokinase fold. It has been suggested that the effect of Mg2+ and phosphate ions on enzymatic activity, observed in several adenosine kinases and ribokinases, would be a widespread feature in the ribokinase family, with the conserved amino acid residues in the NXXE motif playing a role in the binding of these ions at the active site [Maj, M. C., et al. (2002) Biochemistry 41, 4059-4069]. In this work we study the effect of Mg2+ and phosphate ions on Pfk-2 activity and the involvement of residue E190 from the NXXE motif in this behavior. The kinetic data are in agreement with the requirement of a Mg2+ ion, besides the one present in the metal-nucleotide complex, for catalysis in the wild-type enzyme. Since the response to free Mg2+ concentration is greatly affected in the E190Q mutant, we conclude that this residue is required for the proper binding of the catalytic Mg2+ ion at the active site. The E190Q mutant presents a 50-fold decrease in the kcat value and a 15-fold increment in the apparent Km for MgATP(2-). Inorganic phosphate, typically considered an activator of adenosine kinases, ribokinases, and phosphofructokinases (nonhomologous to Pfk-2) acted as an inhibitor of wild-type and E190Q mutant Pfk-2. We suggest that phosphate can bind to the allosteric site of Pfk-2, producing an inhibition pattern qualitatively similar to MgATP(2-), which can be reversed to some extent by increasing the concentration of fructose-6-P. Given that the E190Q mutant presents alterations in the inhibition by MgATP(2-) and phosphate, we conclude that the E190 residue has a role not only in catalysis but also in allosteric regulation.

摘要

来自大肠杆菌的磷酸果糖激酶-2(Pfk-2)属于糖激酶的核糖激酶家族。在核糖激酶家族成员的氨基酸序列中观察到的一个特征是NXXE基序,它位于核糖激酶折叠的活性位点。有人提出,在几种腺苷激酶和核糖激酶中观察到的Mg2+和磷酸根离子对酶活性的影响,在核糖激酶家族中可能是一个普遍特征,NXXE基序中保守的氨基酸残基在这些离子于活性位点的结合中起作用[Maj, M. C., 等人(2002年)《生物化学》41卷,4059 - 4069页]。在这项工作中,我们研究了Mg2+和磷酸根离子对Pfk-2活性的影响以及NXXE基序中E190残基在这种行为中的作用。动力学数据与除了金属 - 核苷酸复合物中存在的那个Mg2+离子外,野生型酶催化还需要一个Mg2+离子的要求一致。由于E190Q突变体对游离Mg2+浓度的响应受到极大影响,我们得出结论,该残基是催化性Mg2+离子在活性位点正确结合所必需的。E190Q突变体的kcat值降低了50倍,而对MgATP(2-)的表观Km增加了15倍。无机磷酸盐通常被认为是腺苷激酶、核糖激酶和磷酸果糖激酶(与Pfk-2不同源)的激活剂,但它对野生型和E190Q突变体Pfk-2起抑制剂作用。我们认为磷酸盐可以结合到Pfk-2的变构位点,产生一种在性质上类似于MgATP(2-)的抑制模式,通过增加6 - 磷酸果糖的浓度可以在一定程度上逆转这种抑制。鉴于E190Q突变体在MgATP(2-)和磷酸盐抑制方面出现改变,我们得出结论,E190残基不仅在催化中起作用,而且在变构调节中也起作用。

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