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用于稠密液体高效混合原子-介观尺度分子动力学模拟的自适应分辨率方案。

Adaptive resolution scheme for efficient hybrid atomistic-mesoscale molecular dynamics simulations of dense liquids.

作者信息

Praprotnik Matej, Delle Site Luigi, Kremer Kurt

机构信息

Max-Planck-Institut für Polymerforschung, Ackermannweg 10, D-55128 Mainz, Germany.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jun;73(6 Pt 2):066701. doi: 10.1103/PhysRevE.73.066701. Epub 2006 Jun 2.

Abstract

The adaptive resolution scheme (AdResS) for efficient hybrid particle-based atomistic/mesoscale molecular dynamics (MD) simulations recently introduced by us, [J. Chem. Phys. 123, 224106 (2005)] is extended to high density molecular liquids with spherical boundaries between the atomistic and mesoscale regions. The key feature of this approach is that it allows for a dynamical change of the number of molecular degrees of freedom during the course of a MD simulation by an on-the-fly switching between the atomistic and mesoscopic levels of detail. Pressure and density variations occurring at the atomistic/mesoscale boundary in the original version are considerably reduced employing the improved methodology presented here.

摘要

我们最近提出的用于高效混合粒子基原子/介观尺度分子动力学(MD)模拟的自适应分辨率方案(AdResS)[《化学物理杂志》123, 224106 (2005)] 被扩展到具有原子尺度和介观尺度区域之间球形边界的高密度分子液体。该方法的关键特性在于,它允许在MD模拟过程中通过在原子尺度和介观尺度细节水平之间实时切换,动态改变分子自由度的数量。采用此处提出的改进方法,可大幅减少原始版本中在原子/介观尺度边界处出现的压力和密度变化。

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