Achary Malkaram S, Reddy Aramati B M, Chakrabarti Subhabrata, Panicker Shirly G, Mandal Anil K, Ahmed Niyaz, Balasubramanian Dorairajan, Hasnain Seyed E, Nagarajaram Hampapathalu A
Centre for DNA Fingerprinting and Diagnostics, Hyderabad, India.
Biophys J. 2006 Dec 15;91(12):4329-39. doi: 10.1529/biophysj.106.085498. Epub 2006 Sep 8.
In this communication, we report an in-depth structure-based analysis of the human CYP1b1 protein carrying disease-causing mutations that are discovered in patients suffering from primary congenital glaucoma (PCG). The "wild-type" and the PCG mutant structures of the human CYP1b1 protein obtained from comparative modeling were subjected to long molecular dynamics simulations with an intention of studying the possible impact of these mutations on the protein structure and hence its function. Analysis of time evolution as well as time averaged values of various structural properties--especially of those of the functionally important regions: the heme binding region, substrate binding region, and substrate access channel--gave some insights into the possible structural characteristics of the disease mutant and the wild-type forms of the protein. In a nutshell, compared to the wild-type the core regions in the mutant structures are associated with subtle but significant changes, and the functionally important regions seem to adopt such structures that are not conducive for the wild-type-like functionality.
在本通讯中,我们报告了对携带在原发性先天性青光眼(PCG)患者中发现的致病突变的人CYP1b1蛋白进行的基于结构的深入分析。通过比较建模获得的人CYP1b1蛋白的“野生型”和PCG突变体结构进行了长时间的分子动力学模拟,旨在研究这些突变对蛋白质结构及其功能的可能影响。对各种结构特性的时间演化以及时间平均值的分析——特别是对功能重要区域:血红素结合区域、底物结合区域和底物进入通道的分析——为该疾病突变体和蛋白质野生型形式的可能结构特征提供了一些见解。简而言之,与野生型相比,突变体结构中的核心区域存在细微但显著的变化,并且功能重要区域似乎采用了不利于野生型样功能的结构。